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fix: Claude Code 2.1.1 compatibility + log-level audit + path validation fixes (#614)

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* Refactor CLAUDE.md and related files for December 2025 updates

- Updated CLAUDE.md in src/services/worker with new entries for December 2025, including changes to Search.ts, GeminiAgent.ts, SDKAgent.ts, and SessionManager.ts.
- Revised CLAUDE.md in src/shared to reflect updates and new entries for December 2025, including paths.ts and worker-utils.ts.
- Modified hook-constants.ts to clarify exit codes and their behaviors.
- Added comprehensive hooks reference documentation for Claude Code, detailing usage, events, and examples.
- Created initial CLAUDE.md files in various directories to track recent activity.

* fix: Merge user-message-hook output into context-hook hookSpecificOutput

- Add footer message to additionalContext in context-hook.ts
- Remove user-message-hook from SessionStart hooks array
- Fixes issue where stderr+exit(1) approach was silently discarded

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Update logs and documentation for recent plugin and worker service changes

- Added detailed logs for worker service activities from Dec 10, 2025 to Jan 7, 2026, including initialization patterns, cleanup confirmations, and diagnostic logging.
- Updated plugin documentation with recent activities, including plugin synchronization and configuration changes from Dec 3, 2025 to Jan 7, 2026.
- Enhanced the context hook and worker service logs to reflect improvements and fixes in the plugin architecture.
- Documented the migration and verification processes for the Claude memory system and its integration with the marketplace.

* Refactor hooks architecture and remove deprecated user-message-hook

- Updated hook configurations in CLAUDE.md and hooks.json to reflect changes in session start behavior.
- Removed user-message-hook functionality as it is no longer utilized in Claude Code 2.1.0; context is now injected silently.
- Enhanced context-hook to handle session context injection without user-visible messages.
- Cleaned up documentation across multiple files to align with the new hook structure and removed references to obsolete hooks.
- Adjusted timing and command execution for hooks to improve performance and reliability.

* fix: Address PR #610 review issues

- Replace USER_MESSAGE_ONLY test with BLOCKING_ERROR test in hook-constants.test.ts
- Standardize Claude Code 2.1.0 note wording across all three documentation files
- Exclude deprecated user-message-hook.ts from logger-usage-standards test

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: Remove hardcoded fake token counts from context injection

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Address PR #610 review issues by fixing test files, standardizing documentation notes, and verifying code quality improvements.

* fix: Add path validation to CLAUDE.md distribution to prevent invalid directory creation

- Add isValidPathForClaudeMd() function to reject invalid paths:
  - Tilde paths (~) that Node.js doesn't expand
  - URLs (http://, https://)
  - Paths with spaces (likely command text or PR references)
  - Paths with # (GitHub issue/PR references)
  - Relative paths that escape project boundary

- Integrate validation in updateFolderClaudeMdFiles loop
- Add 6 unit tests for path validation
- Update .gitignore to prevent accidental commit of malformed directories
- Clean up existing invalid directories (~/, PR #610..., git diff..., https:)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* fix: Implement path validation in CLAUDE.md generation to prevent invalid directory creation

- Added `isValidPathForClaudeMd()` function to validate file paths in `src/utils/claude-md-utils.ts`.
- Integrated path validation in `updateFolderClaudeMdFiles` to skip invalid paths.
- Added 6 new unit tests in `tests/utils/claude-md-utils.test.ts` to cover various rejection cases.
- Updated `.gitignore` to prevent tracking of invalid directories.
- Cleaned up existing invalid directories in the repository.

* feat: Promote critical WARN logs to ERROR level across codebase

Comprehensive log-level audit promoting 38+ WARN messages to ERROR for
improved debugging and incident response:

- Parser: observation type errors, data contamination
- SDK/Agents: empty init responses (Gemini, OpenRouter)
- Worker/Queue: session recovery, auto-recovery failures
- Chroma: sync failures, search failures (now treated as critical)
- SQLite: search failures (primary data store)
- Session/Generator: failures, missing context
- Infrastructure: shutdown, process management failures
- File Operations: CLAUDE.md updates, config reads
- Branch Management: recovery checkout failures

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* fix: Address PR #614 review issues

- Remove incorrectly tracked tilde-prefixed files from git
- Fix absolute path validation to check projectRoot boundaries
- Add test coverage for absolute path validation edge cases

Closes review issues:
- Issue 1: ~/ prefixed files removed from tracking
- Issue 3: Absolute paths now validated against projectRoot
- Issue 4: Added 3 new test cases for absolute path scenarios

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* build assets and context

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
This commit is contained in:
Alex Newman
2026-01-07 23:34:20 -05:00
committed by GitHub
parent 687146ce53
commit 2659ec3231
98 changed files with 8927 additions and 3554 deletions
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docs/reports/CLAUDE.md
+24 -154
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@@ -3,165 +3,35 @@
<!-- This section is auto-generated by claude-mem. Edit content outside the tags. -->
### Jan 2, 2026
**2026-01-02--generator-failure-investigation.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36091 | 10:20 PM | 🔵 | Generator Failure Investigation - Chroma Vector Search Silent Failures | ~436 |
| #36079 | 10:10 PM | 🔴 | Fixed Generator Crashes from Silent Chroma Vector Search Failures | ~531 |
**2026-01-02--stuck-observations.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36004 | 8:14 PM | 🔵 | Comprehensive Investigation Report on Stuck Observations Problem | ~527 |
### Jan 3, 2026
**2026-01-04--session-id-refactor-failures.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36643 | 10:56 PM | 🔵 | Session ID Refactor Test Failures Root Cause | ~513 |
| #36636 | 10:46 PM | 🟣 | Session ID Refactor Analysis Agent Completed Comprehensive Report | ~637 |
| #36626 | 10:44 PM | 🟣 | Session ID Refactor Failures Report Generated | ~569 |
**2026-01-04--gemini-agent-failures.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36638 | 10:47 PM | ✅ | GeminiAgent Failures Report Manually Created After Agent Timeout | ~604 |
**2026-01-04--session-store-failures.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36635 | 10:46 PM | 🟣 | SessionStore Analysis Agent Completed Report Generation | ~545 |
| #36634 | " | ✅ | SessionStore Failures Report Generated With Test Fix Recommendations | ~595 |
**2026-01-04--logger-coverage-failures.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36633 | 10:46 PM | ✅ | Logger Coverage Failures Report Generated | ~559 |
| #36623 | 10:44 PM | 🟣 | Logger Coverage Failures Report Generated | ~249 |
**2026-01-04--session-id-validation-failures.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36628 | 10:44 PM | 🟣 | Session ID Validation Failures Report Generated | ~690 |
**2026-01-04--test-suite-report.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36609 | 10:39 PM | 🟣 | Comprehensive Test Suite Report Generated | ~563 |
**reports**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36599 | 10:37 PM | 🔵 | Reports Directory Structure Confirmed | ~203 |
**2026-01-02--generator-failure-investigation.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36390 | 8:50 PM | 🔄 | Comprehensive Monolith Refactor with Modular Architecture | ~724 |
**2026-01-03--observation-saving-failure.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36113 | 3:58 PM | 🔴 | Fixed FOREIGN KEY Constraint Failure in Observation Storage | ~448 |
### Jan 4, 2026
**2026-01-04--issue-511-gemini-model-missing.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36924 | 2:25 AM | ✅ | Merged fix/pr-538-followups branch into main with comprehensive updates | ~481 |
| #36827 | 1:03 AM | ✅ | Branch diff shows 1,293 insertions and 98 deletions across 15 files | ~464 |
| #36781 | 12:45 AM | 🔵 | Complete GeminiAgent Model Configuration Gap Analysis | ~552 |
| #36776 | 12:43 AM | 🔵 | Issue #511 Analysis Document Located | ~459 |
| #36759 | 12:34 AM | ✅ | Created Issue #511 Analysis Report | ~304 |
**2026-01-04--issue-517-windows-powershell-analysis.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36779 | 12:44 AM | 🔵 | ProcessManager Windows PowerShell Functions Complete Analysis | ~550 |
| #36720 | 12:15 AM | 🔵 | Issue #517 Windows PowerShell Analysis Completed | ~631 |
| #36718 | " | 🔵 | Issue #517 Analysis - Windows PowerShell Variable Escaping Bug | ~482 |
**2026-01-04--issue-531-export-type-duplication.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36760 | 12:34 AM | ✅ | Created Issue #531 Report: Export Script Type Duplication | ~430 |
**2026-01-04--gemini-agent-failures.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36751 | 12:32 AM | 🔵 | Gemini-Related Files Located Across Project | ~242 |
**reports**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36748 | 12:31 AM | 🔵 | Existing GitHub Issue Reports Located | ~271 |
**2026-01-04--issue-527-uv-homebrew-analysis.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36721 | 12:15 AM | 🔵 | Issue #527 UV Homebrew Path Missing on Apple Silicon | ~492 |
| #36719 | " | 🔵 | Issue #527 uv Homebrew Detection Missing on Apple Silicon Macs | ~526 |
**2026-01-04--issue-514-orphaned-sessions-analysis.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36717 | 12:14 AM | 🔵 | Issue #514 Orphaned Sessions Analysis Completed | ~723 |
| #36716 | 12:13 AM | 🔵 | Issue #514 Orphaned .jsonl Session Files Analysis | ~616 |
**2026-01-04--issue-532-memory-leak-analysis.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36714 | 12:12 AM | 🔵 | Memory Leak Analysis Report for Issue #532 Generated | ~531 |
| #36712 | 12:11 AM | 🔵 | Memory Leak Analysis for Issue #532 Documented | ~646 |
**2026-01-04--issue-520-stuck-messages-analysis.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36713 | 12:11 AM | 🔵 | Issue #520 Stuck Messages Already Resolved | ~569 |
| #36711 | " | 🔵 | Issue #520 Stuck Messages Analysis - Already Resolved | ~526 |
**2026-01-02--stuck-observations.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #36710 | 12:07 AM | 🔵 | Stuck Observations Analysis - Six Critical Lifecycle Gaps | ~677 |
### Jan 5, 2026
**2026-01-05--issue-544-mem-search-hint-claude-code.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #37613 | 5:31 PM | 🔵 | PR #558 Review Feedback Analysis | ~544 |
| #37555 | 4:49 PM | 🔵 | Issue #544 Message Locations and Fix Pattern Documented | ~463 |
| #37545 | 4:47 PM | ✅ | Issue #544 Analysis Report Created for mem-search Skill Messaging Problem | ~480 |
| #37962 | 8:18 PM | 🔴 | Fixed SessionStart hook crash when stdin is undefined | ~440 |
### Jan 7, 2026
**2026-01-05--issue-555-windows-hooks-ipc-false.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #37558 | 4:49 PM | 🔵 | Issue #555 Windows Hook Execution Patterns and Fix Strategy Documented | ~510 |
**2026-01-05--issue-545-formattool-json-parse-crash.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #37557 | 4:49 PM | 🔵 | Issue #545 Bug Location and Fix Pattern Documented | ~462 |
**2026-01-05--issue-543-slash-command-unavailable.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #37548 | 4:48 PM | ✅ | Issue #543 Analysis Report Created for Slash Command Availability | ~540 |
**2026-01-05--issue-557-settings-module-loader-error.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #37547 | 4:47 PM | ✅ | Issue #557 Analysis Report Created for Plugin Startup Failure | ~491 |
### Jan 6, 2026
**2026-01-06--windows-woes-comprehensive-report.md**
| ID | Time | T | Title | Read |
|----|------|---|-------|------|
| #38109 | 12:16 AM | ✅ | Comprehensive Windows Woes Report Generated from Memory Search | ~826 |
| #38475 | 10:31 PM | ⚖️ | Log Level Philosophy: Error-Adjacent Messages Promoted to ERROR | ~412 |
| #38467 | 10:29 PM | ⚖️ | Log Level Audit Strategy: Tighten ERROR Messages for Runtime Issue Discovery | ~464 |
| #38445 | 10:26 PM | 🔵 | DEBUG Level Logging: SessionRoutes Line 211 Error-During-Recovery Pattern | ~500 |
| #38442 | 10:25 PM | 🔵 | Log Audit Contains 409 Source File Log Entries | ~293 |
| #38441 | " | 🔵 | DEBUG-level logging patterns for diagnostics and non-critical operations | ~595 |
| #38439 | " | 🔵 | Log Audit Shows SessionRoutes.ts Has Two WARN Messages for Generator Failures | ~493 |
| #38438 | " | 🔵 | WARN Level Log Patterns: Graceful Degradation and Fallback Behavior | ~539 |
| #38437 | 10:24 PM | 🔵 | Claude-mem core functionality and logging patterns identified | ~710 |
| #38428 | " | 🔵 | Log level audit report structure and content examined | ~559 |
| #38425 | " | ⚖️ | Log Level Architecture: Fail-Critical Over Fail-Fast for Chroma | ~467 |
| #38416 | 10:22 PM | 🔵 | ChromaDB Is Critical Not Optional - Log Audit Findings Challenged | ~405 |
| #38405 | 10:07 PM | ⚖️ | DEBUG Log Level Analysis - One Message Requires WARN Promotion | ~819 |
| #38404 | 10:06 PM | ⚖️ | Log Level Audit Analysis - WARN to ERROR Promotion Criteria Established | ~769 |
| #38403 | 10:04 PM | 🔵 | Log Level Audit - INFO and DEBUG Level Messages Catalogued | ~688 |
| #38402 | 10:03 PM | 🔵 | Log Level Audit Report Analysis - Critical Error Messages Identified | ~642 |
| #38401 | 10:00 PM | 🔵 | Enhanced Audit Report Reveals Error Logging Patterns and Message Extraction Issues | ~498 |
| #38394 | 9:58 PM | ✅ | Created Log Level Audit Report Documentation | ~319 |
| #38393 | " | ✅ | Enhanced Log Audit Report Format with Component Tags and Full Logger Calls | ~393 |
| #38386 | 9:56 PM | ✅ | Log Audit Report Generated and Saved to Documentation | ~442 |
| #38385 | " | ✅ | Log Level Audit Report Saved to Documentation | ~379 |
| #38251 | 7:46 PM | 🔵 | Comprehensive Windows Platform Issues Report | ~982 |
</claude-mem-context>