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backup: Phase 1 agent work (security, persistence, batch endpoint)

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This is a backup of all work done by the 3 Phase 1 agents:

Agent A - Command Injection Fix (Issue #354):
- Fixed command injection in BranchManager.ts
- Fixed unnecessary shell usage in bun-path.ts
- Added comprehensive security test suite
- Created SECURITY.md and SECURITY_AUDIT_REPORT.md

Agent B - Observation Persistence Fix (Issue #353):
- Added PendingMessageStore from PR #335
- Integrated persistent queue into SessionManager
- Modified SDKAgent to mark messages complete
- Updated SessionStore with pending_messages migration
- Updated worker-types.ts with new interfaces

Agent C - Batch Endpoint Verification (Issue #348):
- Created batch-observations.test.ts
- Updated worker-service.mdx documentation

Also includes:
- Documentation context files (biomimetic, windows struggles)
- Build artifacts from agent testing

This work will be re-evaluated after v7.3.0 release.
This commit is contained in:
Alex Newman
2025-12-16 15:44:06 -05:00
parent 2e919df2b4
commit 282345f379
41 changed files with 3130 additions and 147 deletions
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