Refactor worker port handling and improve logging
- Replaced hardcoded migration port with dynamic port retrieval using `getWorkerPort()` in worker-cli.ts. - Updated context generator to clarify error handling comments. - Introduced timeout constants in ProcessManager for better maintainability. - Configured SQLite settings using constants for mmap size and cache size in DatabaseManager. - Added timeout constants for Git and NPM commands in BranchManager. - Enhanced error logging in FormattingService and SearchManager to provide more context on failures. - Removed deprecated silentDebug function and replaced its usage with logger.debug. - Updated tests to use dynamic worker port retrieval instead of hardcoded values.
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