a32151a166b70587f8ae67c35b5ebdf06d57ce81
5 Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 Alex Newman
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0a26bb18bf |
fix: update footer text to reference claude-mem skill instead of MCP search tools
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
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Alex Newman
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7966c6cba9 |
fix: rename save_memory and fix MCP search instructions + startup hook (#1210)
* fix: rename save_memory to save_observation and fix MCP search instructions Stop the primary agent from proactively saving memories by renaming save_memory to save_observation with a neutral description. Remove "Saving Memories" section from SKILL.md. Update context formatters and output styles to reference the mem-search skill instead of raw MCP tool names. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: split SessionStart hooks so smart-install failure doesn't block worker start smart-install.js and worker-start were in the same hook group, so if smart-install exited non-zero the worker never started. Split into separate hook groups so they run independently. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: worker startup waits for readiness before hooks fire Move initializationCompleteFlag to set after DB/search init (not MCP), add waitForReadiness() polling /api/readiness, and extract shared pollEndpointUntilOk helper to DRY up health/readiness checks. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com> |
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Alex Newman
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f38b5b85bc |
fix: resolve issues #543, #544, #545, #557 (#558)
* docs: add investigation reports for 5 open GitHub issues Comprehensive analysis of issues #543, #544, #545, #555, and #557: - #557: settings.json not generated, module loader error (node/bun mismatch) - #555: Windows hooks not executing, hasIpc always false - #545: formatTool crashes on non-JSON tool_input strings - #544: mem-search skill hint shown incorrectly to Claude Code users - #543: /claude-mem slash command unavailable despite installation Each report includes root cause analysis, affected files, and proposed fixes. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix(logger): handle non-JSON tool_input in formatTool (#545) Wrap JSON.parse in try-catch to handle raw string inputs (e.g., Bash commands) that aren't valid JSON. Falls back to using the string as-is. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix(context): update mem-search hint to reference MCP tools (#544) Update hint messages to reference MCP tools (search, get_observations) instead of the deprecated "mem-search skill" terminology. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix(settings): auto-create settings.json on first load (#557, #543) When settings.json doesn't exist, create it with defaults instead of returning in-memory defaults. Creates parent directory if needed. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix(hooks): use bun runtime for hooks except smart-install (#557) Change hook commands from node to bun since hooks use bun:sqlite. Keep smart-install.js on node since it bootstraps bun installation. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * chore: rebuild plugin scripts * docs: clarify that build artifacts must be committed * fix(docs): update build artifacts directory reference in CLAUDE.md * test: add test coverage for PR #558 fixes - Fix 2 failing tests: update "mem-search skill" → "MCP tools" expectations - Add 56 tests for formatTool() JSON.parse crash fix (Issue #545) - Add 27 tests for settings.json auto-creation (Issue #543) Test coverage includes: - formatTool: JSON parsing, raw strings, objects, null/undefined, all tool types - Settings: file creation, directory creation, schema migration, edge cases 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix(tests): clean up flaky tests and fix circular dependency Phase 1 of test quality improvements: - Delete 6 harmful/worthless test files that used problematic mock.module() patterns or tested implementation details rather than behavior: - context-builder.test.ts (tested internal implementation) - export-types.test.ts (fragile mock patterns) - smart-install.test.ts (shell script testing antipattern) - session_id_refactor.test.ts (outdated, tested refactoring itself) - validate_sql_update.test.ts (one-time migration validation) - observation-broadcaster.test.ts (excessive mocking) - Fix circular dependency between logger.ts and SettingsDefaultsManager.ts by using late binding pattern - logger now lazily loads settings - Refactor mock.module() to spyOn() in several test files for more maintainable and less brittle tests: - observation-compiler.test.ts - gemini_agent.test.ts - error-handler.test.ts - server.test.ts - response-processor.test.ts All 649 tests pass. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor(tests): phase 2 - reduce mock-heavy tests and improve focus - Remove mock-heavy query tests from observation-compiler.test.ts, keep real buildTimeline tests - Convert session_id_usage_validation.test.ts from 477 to 178 lines of focused smoke tests - Remove tests for language built-ins from worker-spawn.test.ts (JSON.parse, array indexing) - Rename logger-coverage.test.ts to logger-usage-standards.test.ts for clarity 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * docs(tests): phase 3 - add JSDoc mock justification to test files Document mock usage rationale in 5 test files to improve maintainability: - error-handler.test.ts: Express req/res mocks, logger spies (~11%) - fallback-error-handler.test.ts: Zero mocks, pure function tests - session-cleanup-helper.test.ts: Session fixtures, worker mocks (~19%) - hook-constants.test.ts: process.platform mock for Windows tests (~12%) - session_store.test.ts: Zero mocks, real SQLite :memory: database Part of ongoing effort to document mock justifications per TESTING.md guidelines. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * test(integration): phase 5 - add 72 tests for critical coverage gaps Add comprehensive test coverage for previously untested areas: - tests/integration/hook-execution-e2e.test.ts (10 tests) Tests lifecycle hooks execution flow and context propagation - tests/integration/worker-api-endpoints.test.ts (19 tests) Tests all worker service HTTP endpoints without heavy mocking - tests/integration/chroma-vector-sync.test.ts (16 tests) Tests vector embedding synchronization with ChromaDB - tests/utils/tag-stripping.test.ts (27 tests) Tests privacy tag stripping utilities for both <private> and <meta-observation> tags All tests use real implementations where feasible, following the project's testing philosophy of preferring integration-style tests over unit tests with extensive mocking. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * context update * docs: add comment linking DEFAULT_DATA_DIR locations Added NOTE comment in logger.ts pointing to the canonical DEFAULT_DATA_DIR in SettingsDefaultsManager.ts. This addresses PR reviewer feedback about the fragility of having the default defined in two places to avoid circular dependencies. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com> |
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Alex Newman
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91446c69e5 |
feat: add timestamp to context header
Display current date/time in context header for both terminal (Color) and markdown formatters. Shows format like "2026-01-04 2:46am EST". Also bumps version to 8.5.9. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> |
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Alex Newman
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2fc4153bef |
refactor: decompose monolithic services into modular architecture (#534)
* docs: add monolith refactor report with system breakdown Comprehensive analysis of codebase identifying: - 14 files over 500 lines requiring refactoring - 3 critical monoliths (SessionStore, SearchManager, worker-service) - 80% code duplication across agent files - 5-phase refactoring roadmap with domain-based architecture * fix: prevent memory_session_id from equaling content_session_id The bug: memory_session_id was initialized to contentSessionId as a "placeholder for FK purposes". This caused the SDK resume logic to inject memory agent messages into the USER's Claude Code transcript, corrupting their conversation history. Root cause: - SessionStore.createSDKSession initialized memory_session_id = contentSessionId - SDKAgent checked memorySessionId !== contentSessionId but this check only worked if the session was fetched fresh from DB The fix: - SessionStore: Initialize memory_session_id as NULL, not contentSessionId - SDKAgent: Simple truthy check !!session.memorySessionId (NULL = fresh start) - Database migration: Ran UPDATE to set memory_session_id = NULL for 1807 existing sessions that had the bug Also adds [ALIGNMENT] logging across the session lifecycle to help debug session continuity issues: - Hook entry: contentSessionId + promptNumber - DB lookup: contentSessionId → memorySessionId mapping proof - Resume decision: shows which memorySessionId will be used for resume - Capture: logs when memorySessionId is captured from first SDK response UI: Added "Alignment" quick filter button in LogsModal to show only alignment logs for debugging session continuity. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor: improve error handling in worker-service.ts - Fix GENERIC_CATCH anti-patterns by logging full error objects instead of just messages - Add [ANTI-PATTERN IGNORED] markers for legitimate cases (cleanup, hot paths) - Simplify error handling comments to be more concise - Improve httpShutdown() error discrimination for ECONNREFUSED - Reduce LARGE_TRY_BLOCK issues in initialization code Part of anti-pattern cleanup plan (132 total issues) * refactor: improve error logging in SearchManager.ts - Pass full error objects to logger instead of just error.message - Fixes PARTIAL_ERROR_LOGGING anti-patterns (10 instances) - Better debugging visibility when Chroma queries fail Part of anti-pattern cleanup (133 remaining) * refactor: improve error logging across SessionStore and mcp-server - SessionStore.ts: Fix error logging in column rename utility - mcp-server.ts: Log full error objects instead of just error.message - Improve error handling in Worker API calls and tool execution Part of anti-pattern cleanup (133 remaining) * Refactor hooks to streamline error handling and loading states - Simplified error handling in useContextPreview by removing try-catch and directly checking response status. - Refactored usePagination to eliminate try-catch, improving readability and maintaining error handling through response checks. - Cleaned up useSSE by removing unnecessary try-catch around JSON parsing, ensuring clarity in message handling. - Enhanced useSettings by streamlining the saving process, removing try-catch, and directly checking the result for success. * refactor: add error handling back to SearchManager Chroma calls - Wrap queryChroma calls in try-catch to prevent generator crashes - Log Chroma errors as warnings and fall back gracefully - Fixes generator failures when Chroma has issues - Part of anti-pattern cleanup recovery * feat: Add generator failure investigation report and observation duplication regression report - Created a comprehensive investigation report detailing the root cause of generator failures during anti-pattern cleanup, including the impact, investigation process, and implemented fixes. - Documented the critical regression causing observation duplication due to race conditions in the SDK agent, outlining symptoms, root cause analysis, and proposed fixes. * fix: address PR #528 review comments - atomic cleanup and detector improvements This commit addresses critical review feedback from PR #528: ## 1. Atomic Message Cleanup (Fix Race Condition) **Problem**: SessionRoutes.ts generator error handler had race condition - Queried messages then marked failed in loop - If crash during loop → partial marking → inconsistent state **Solution**: - Added `markSessionMessagesFailed()` to PendingMessageStore.ts - Single atomic UPDATE statement replaces loop - Follows existing pattern from `resetProcessingToPending()` **Files**: - src/services/sqlite/PendingMessageStore.ts (new method) - src/services/worker/http/routes/SessionRoutes.ts (use new method) ## 2. Anti-Pattern Detector Improvements **Problem**: Detector didn't recognize logger.failure() method - Lines 212 & 335 already included "failure" - Lines 112-113 (PARTIAL_ERROR_LOGGING detection) did not **Solution**: Updated regex patterns to include "failure" for consistency **Files**: - scripts/anti-pattern-test/detect-error-handling-antipatterns.ts ## 3. Documentation **PR Comment**: Added clarification on memory_session_id fix location - Points to SessionStore.ts:1155 - Explains why NULL initialization prevents message injection bug ## Review Response Addresses "Must Address Before Merge" items from review: ✅ Clarified memory_session_id bug fix location (via PR comment) ✅ Made generator error handler message cleanup atomic ❌ Deferred comprehensive test suite to follow-up PR (keeps PR focused) ## Testing - Build passes with no errors - Anti-pattern detector runs successfully - Atomic cleanup follows proven pattern from existing methods 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com> * fix: FOREIGN KEY constraint and missing failed_at_epoch column Two critical bugs fixed: 1. Missing failed_at_epoch column in pending_messages table - Added migration 20 to create the column - Fixes error when trying to mark messages as failed 2. FOREIGN KEY constraint failed when storing observations - All three agents (SDK, Gemini, OpenRouter) were passing session.contentSessionId instead of session.memorySessionId - storeObservationsAndMarkComplete expects memorySessionId - Added null check and clear error message However, observations still not saving - see investigation report. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com> * Refactor hook input parsing to improve error handling - Added a nested try-catch block in new-hook.ts, save-hook.ts, and summary-hook.ts to handle JSON parsing errors more gracefully. - Replaced direct error throwing with logging of the error details using logger.error. - Ensured that the process exits cleanly after handling input in all three hooks. * docs: update monolith report post session-logging merge - SessionStore grew to 2,011 lines (49 methods) - highest priority - SearchManager reduced to 1,778 lines (improved) - Agent files reduced by ~45 lines combined - Added trend indicators and post-merge observations - Core refactoring proposal remains valid * refactor(sqlite): decompose SessionStore into modular architecture Extract the 2011-line SessionStore.ts monolith into focused, single-responsibility modules following grep-optimized progressive disclosure pattern: New module structure: - sessions/ - Session creation and retrieval (create.ts, get.ts, types.ts) - observations/ - Observation storage and queries (store.ts, get.ts, recent.ts, files.ts, types.ts) - summaries/ - Summary storage and queries (store.ts, get.ts, recent.ts, types.ts) - prompts/ - User prompt management (store.ts, get.ts, types.ts) - timeline/ - Cross-entity timeline queries (queries.ts) - import/ - Bulk import operations (bulk.ts) - migrations/ - Database migrations (runner.ts) New coordinator files: - Database.ts - ClaudeMemDatabase class with re-exports - transactions.ts - Atomic cross-entity transactions - Named re-export facades (Sessions.ts, Observations.ts, etc.) Key design decisions: - All functions take `db: Database` as first parameter (functional style) - Named re-exports instead of index.ts for grep-friendliness - SessionStore retained as backward-compatible wrapper - Target file size: 50-150 lines (60% compliance) 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor(agents): extract shared logic into modular architecture Consolidate duplicate code across SDKAgent, GeminiAgent, and OpenRouterAgent into focused utility modules. Total reduction: 500 lines (29%). New modules in src/services/worker/agents/: - ResponseProcessor.ts: Atomic DB transactions, Chroma sync, SSE broadcast - ObservationBroadcaster.ts: SSE event formatting and dispatch - SessionCleanupHelper.ts: Session state cleanup and stuck message reset - FallbackErrorHandler.ts: Provider error detection for fallback logic - types.ts: Shared interfaces (WorkerRef, SSE payloads, StorageResult) Bug fix: SDKAgent was incorrectly using obs.files instead of obs.files_read and hardcoding files_modified to empty array. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor(search): extract search strategies into modular architecture Decompose SearchManager into focused strategy pattern with: - SearchOrchestrator: Coordinates strategy selection and fallback - ChromaSearchStrategy: Vector semantic search via ChromaDB - SQLiteSearchStrategy: Filter-only queries for date/project/type - HybridSearchStrategy: Metadata filtering + semantic ranking - ResultFormatter: Markdown table formatting for results - TimelineBuilder: Chronological timeline construction - Filter modules: DateFilter, ProjectFilter, TypeFilter SearchManager now delegates to new infrastructure while maintaining full backward compatibility with existing public API. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor(context): decompose context-generator into modular architecture Extract 660-line monolith into focused components: - ContextBuilder: Main orchestrator (~160 lines) - ContextConfigLoader: Configuration loading - TokenCalculator: Token budget calculations - ObservationCompiler: Data retrieval and query building - MarkdownFormatter/ColorFormatter: Output formatting - Section renderers: Header, Timeline, Summary, Footer Maintains full backward compatibility - context-generator.ts now delegates to new ContextBuilder while preserving public API. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor(worker): decompose worker-service into modular infrastructure Split 2000+ line monolith into focused modules: Infrastructure: - ProcessManager: PID files, signal handlers, child process cleanup - HealthMonitor: Port checks, health polling, version matching - GracefulShutdown: Coordinated cleanup on exit Server: - Server: Express app setup, core routes, route registration - Middleware: Re-exports from existing middleware - ErrorHandler: Centralized error handling with AppError class Integrations: - CursorHooksInstaller: Full Cursor IDE integration (registry, hooks, MCP) WorkerService now acts as thin coordinator wiring all components together. Maintains full backward compatibility with existing public API. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * Refactor session queue processing and database interactions - Implement claim-and-delete pattern in SessionQueueProcessor to simplify message handling and eliminate duplicate processing. - Update PendingMessageStore to support atomic claim-and-delete operations, removing the need for intermediate processing states. - Introduce storeObservations method in SessionStore for simplified observation and summary storage without message tracking. - Remove deprecated methods and clean up session state management in worker agents. - Adjust response processing to accommodate new storage patterns, ensuring atomic transactions for observations and summaries. - Remove unnecessary reset logic for stuck messages due to the new queue handling approach. * Add duplicate observation cleanup script Script to clean up duplicate observations created by the batching bug where observations were stored once per message ID instead of once per observation. Includes safety checks to always keep at least one copy. Usage: bun scripts/cleanup-duplicates.ts # Dry run bun scripts/cleanup-duplicates.ts --execute # Delete duplicates bun scripts/cleanup-duplicates.ts --aggressive # Ignore time window 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> --------- Co-authored-by: Claude <noreply@anthropic.com> |