* docs: pathfinder refactor corpus + Node 20 preflight
Adds the PATHFINDER-2026-04-22 principle-driven refactor plan (11 docs,
cross-checked PASS) plus the exploratory PATHFINDER-2026-04-21 corpus
that motivated it. Bumps engines.node to >=20.0.0 per the ingestion-path
plan preflight (recursive fs.watch). Adds the pathfinder skill.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* refactor: land PATHFINDER Plan 01 — data integrity
Schema, UNIQUE constraints, self-healing claim, Chroma upsert fallback.
- Phase 1: fresh schema.sql regenerated at post-refactor shape.
- Phase 2: migrations 23+24 — rebuild pending_messages without
started_processing_at_epoch; UNIQUE(session_id, tool_use_id);
UNIQUE(memory_session_id, content_hash) on observations; dedup
duplicate rows before adding indexes.
- Phase 3: claimNextMessage rewritten to self-healing query using
worker_pid NOT IN live_worker_pids; STALE_PROCESSING_THRESHOLD_MS
and the 60-s stale-reset block deleted.
- Phase 4: DEDUP_WINDOW_MS and findDuplicateObservation deleted;
observations.insert now uses ON CONFLICT DO NOTHING.
- Phase 5: failed-message purge block deleted from worker-service
2-min interval; clearFailedOlderThan method deleted.
- Phase 6: repairMalformedSchema and its Python subprocess repair
path deleted from Database.ts; SQLite errors now propagate.
- Phase 7: Chroma delete-then-add fallback gated behind
CHROMA_SYNC_FALLBACK_ON_CONFLICT env flag as bridge until
Chroma MCP ships native upsert.
- Phase 8: migration 19 no-op block absorbed into fresh schema.sql.
Verification greps all return 0 matches. bun test tests/sqlite/
passes 63/63. bun run build succeeds.
Plan: PATHFINDER-2026-04-22/01-data-integrity.md
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* refactor: land PATHFINDER Plan 02 — process lifecycle
OS process groups replace hand-rolled reapers. Worker runs until
killed; orphans are prevented by detached spawn + kill(-pgid).
- Phase 1: src/services/worker/ProcessRegistry.ts DELETED. The
canonical registry at src/supervisor/process-registry.ts is the
sole survivor; SDK spawn site consolidated into it via new
createSdkSpawnFactory/spawnSdkProcess/getSdkProcessForSession/
ensureSdkProcessExit/waitForSlot helpers.
- Phase 2: SDK children spawn with detached:true + stdio:
['ignore','pipe','pipe']; pgid recorded on ManagedProcessInfo.
- Phase 3: shutdown.ts signalProcess teardown uses
process.kill(-pgid, signal) on Unix when pgid is recorded;
Windows path unchanged (tree-kill/taskkill).
- Phase 4: all reaper intervals deleted — startOrphanReaper call,
staleSessionReaperInterval setInterval (including the co-located
WAL checkpoint — SQLite's built-in wal_autocheckpoint handles
WAL growth without an app-level timer), killIdleDaemonChildren,
killSystemOrphans, reapOrphanedProcesses, reapStaleSessions, and
detectStaleGenerator. MAX_GENERATOR_IDLE_MS and MAX_SESSION_IDLE_MS
constants deleted.
- Phase 5: abandonedTimer — already 0 matches; primary-path cleanup
via generatorPromise.finally() already lives in worker-service
startSessionProcessor and SessionRoutes ensureGeneratorRunning.
- Phase 6: evictIdlestSession and its evict callback deleted from
SessionManager. Pool admission gates backpressure upstream.
- Phase 7: SDK-failure fallback — SessionManager has zero matches
for fallbackAgent/Gemini/OpenRouter. Failures surface to hooks
via exit code 2 through SessionRoutes error mapping.
- Phase 8: ensureWorkerRunning in worker-utils.ts rewritten to
lazy-spawn — consults isWorkerPortAlive (which gates
captureProcessStartToken for PID-reuse safety via commit
99060bac), then spawns detached with unref(), then
waitForWorkerPort({ attempts: 3, backoffMs: 250 }) hand-rolled
exponential backoff 250→500→1000ms. No respawn npm dep.
- Phase 9: idle self-shutdown — zero matches for
idleCheck/idleTimeout/IDLE_MAX_MS/idleShutdown. Worker exits
only on external SIGTERM via supervisor signal handlers.
Three test files that exercised deleted code removed:
tests/worker/process-registry.test.ts,
tests/worker/session-lifecycle-guard.test.ts,
tests/services/worker/reap-stale-sessions.test.ts.
Pass count: 1451 → 1407 (-44), all attributable to deleted test
files. Zero new failures. 31 pre-existing failures remain
(schema-repair suite, logger-usage-standards, environmental
openclaw / plugin-distribution) — none introduced by Plan 02.
All 10 verification greps return 0. bun run build succeeds.
Plan: PATHFINDER-2026-04-22/02-process-lifecycle.md
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* refactor: land PATHFINDER Plan 04 (narrowed) — search fail-fast
Phases 3, 5, 6 only. Plan-doc inaccuracies for phases 1/2/4/7/8/9
deferred for plan reconciliation:
- Phase 1/2: ObservationRow type doesn't exist; the four
"formatters" operate on three incompatible types.
- Phase 4: RECENCY_WINDOW_MS already imported from
SEARCH_CONSTANTS at every call site.
- Phase 7: getExistingChromaIds is NOT @deprecated and has an
active caller in ChromaSync.backfillMissingSyncs.
- Phase 8: estimateTokens already consolidated.
- Phase 9: knowledge-corpus rewrite blocked on PG-3
prompt-caching cost smoke test.
Phase 3 — Delete SearchManager.findByConcept/findByFile/findByType.
SearchRoutes handlers (handleSearchByConcept/File/Type) now call
searchManager.getOrchestrator().findByXxx() directly via new
getter accessors on SearchManager. ~250 LoC deleted.
Phase 5 — Fail-fast Chroma. Created
src/services/worker/search/errors.ts with ChromaUnavailableError
extends AppError(503, 'CHROMA_UNAVAILABLE'). Deleted
SearchOrchestrator.executeWithFallback's Chroma-failed
SQLite-fallback branch; runtime Chroma errors now throw 503.
"Path 3" (chromaSync was null at construction — explicit-
uninitialized config) preserved as legitimate empty-result state
per plan text. ChromaSearchStrategy.search no longer wraps in
try/catch — errors propagate.
Phase 6 — Delete HybridSearchStrategy three try/catch silent
fallback blocks (findByConcept, findByType, findByFile) at lines
~82-95, ~120-132, ~161-172. Removed `fellBack` field from
StrategySearchResult type and every return site
(SQLiteSearchStrategy, BaseSearchStrategy.emptyResult,
SearchOrchestrator).
Tests updated (Principle 7 — delete in same PR):
- search-orchestrator.test.ts: "fall back to SQLite" rewritten
as "throw ChromaUnavailableError (HTTP 503)".
- chroma/hybrid/sqlite-search-strategy tests: rewritten to
rejects.toThrow; removed fellBack assertions.
Verification: SearchManager.findBy → 0; fellBack → 0 in src/.
bun test tests/worker/search/ → 122 pass, 0 fail.
bun test (suite-wide) → 1407 pass, baseline maintained, 0 new
failures. bun run build succeeds.
Plan: PATHFINDER-2026-04-22/04-read-path.md (Phases 3, 5, 6)
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* refactor: land PATHFINDER Plan 03 — ingestion path
Fail-fast parser, direct in-process ingest, recursive fs.watch,
DB-backed tool pairing. Worker-internal HTTP loopback eliminated.
- Phase 0: Created src/services/worker/http/shared.ts exporting
ingestObservation/ingestPrompt/ingestSummary as direct
in-process functions plus ingestEventBus (Node EventEmitter,
reusing existing pattern — no third event bus introduced).
setIngestContext wires the SessionManager dependency from
worker-service constructor.
- Phase 1: src/sdk/parser.ts collapsed to one parseAgentXml
returning { valid:true; kind: 'observation'|'summary'; data }
| { valid:false; reason: string }. Inspects root element;
<skip_summary reason="…"/> is a first-class summary case
with skipped:true. NEVER returns undefined. NEVER coerces.
- Phase 2: ResponseProcessor calls parseAgentXml exactly once,
branches on the discriminated union. On invalid → markFailed
+ logger.warn(reason). On observation → ingestObservation.
On summary → ingestSummary then emit summaryStoredEvent
{ sessionId, messageId } (consumed by Plan 05's blocking
/api/session/end).
- Phase 3: Deleted consecutiveSummaryFailures field
(ResponseProcessor + SessionManager + worker-types) and
MAX_CONSECUTIVE_SUMMARY_FAILURES constant. Circuit-breaker
guards and "tripped" log lines removed.
- Phase 4: coerceObservationToSummary deleted from sdk/parser.ts.
- Phase 5: src/services/transcripts/watcher.ts rescan setInterval
replaced with fs.watch(transcriptsRoot, { recursive: true,
persistent: true }) — Node 20+ recursive mode.
- Phase 6: src/services/transcripts/processor.ts pendingTools
Map deleted. tool_use rows insert with INSERT OR IGNORE on
UNIQUE(session_id, tool_use_id) (added by Plan 01). New
pairToolUsesByJoin query in PendingMessageStore for read-time
pairing (UNIQUE INDEX provides idempotency; explicit consumer
not yet wired).
- Phase 7: HTTP loopback at processor.ts:252 replaced with
direct ingestObservation call. maybeParseJson silent-passthrough
rewritten to fail-fast (throws on malformed JSON).
- Phase 8: src/utils/tag-stripping.ts countTags + stripTagsInternal
collapsed into one alternation regex, single-pass over input.
- Phase 9: src/utils/transcript-parser.ts (dead TranscriptParser
class) deleted. The active extractLastMessage at
src/shared/transcript-parser.ts:41-144 is the sole survivor.
Tests updated (Principle 7 — same-PR delete):
- tests/sdk/parser.test.ts + parse-summary.test.ts: rewritten
to assert discriminated-union shape; coercion-specific
scenarios collapse into { valid:false } assertions.
- tests/worker/agents/response-processor.test.ts: circuit-breaker
describe block skipped; non-XML/empty-response tests assert
fail-fast markFailed behavior.
Verification: every grep returns 0. transcript-parser.ts deleted.
bun run build succeeds. bun test → 1399 pass / 28 fail / 7 skip
(net -8 pass = the 4 retired circuit-breaker tests + 4 collapsed
parser cases). Zero new failures vs baseline.
Deferred (out of Plan 03 scope, will land in Plan 06): SessionRoutes
HTTP route handlers still call sessionManager.queueObservation
inline rather than the new shared helpers — the helpers are ready,
the route swap is mechanical and belongs with the Zod refactor.
Plan: PATHFINDER-2026-04-22/03-ingestion-path.md
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* refactor: land PATHFINDER Plan 05 — hook surface
Worker-call plumbing collapsed to one helper. Polling replaced by
server-side blocking endpoint. Fail-loud counter surfaces persistent
worker outages via exit code 2.
- Phase 1: plugin/hooks/hooks.json — three 20-iteration `for i in
1..20; do curl -sf .../health && break; sleep 0.1; done` shell
retry wrappers deleted. Hook commands invoke their bun entry
point directly.
- Phase 2: src/shared/worker-utils.ts — added
executeWithWorkerFallback<T>(url, method, body) returning
T | { continue: true; reason?: string }. All 8 hook handlers
(observation, session-init, context, file-context, file-edit,
summarize, session-complete, user-message) rewritten to use
it instead of duplicating the ensureWorkerRunning →
workerHttpRequest → fallback sequence.
- Phase 3: blocking POST /api/session/end in SessionRoutes.ts
using validateBody + sessionEndSchema (z.object({sessionId})).
One-shot ingestEventBus.on('summaryStoredEvent') listener,
30 s timer, req.aborted handler — all share one cleanup so
the listener cannot leak. summarize.ts polling loop, plus
MAX_WAIT_FOR_SUMMARY_MS / POLL_INTERVAL_MS constants, deleted.
- Phase 4: src/shared/hook-settings.ts — loadFromFileOnce()
memoizes SettingsDefaultsManager.loadFromFile per process.
Per-handler settings reads collapsed.
- Phase 5: src/shared/should-track-project.ts — single exclusion
check entry; isProjectExcluded no longer referenced from
src/cli/handlers/.
- Phase 6: cwd validation pushed into adapter normalizeInput
(all 6 adapters: claude-code, cursor, raw, gemini-cli,
windsurf). New AdapterRejectedInput error in
src/cli/adapters/errors.ts. Handler-level isValidCwd checks
deleted from file-edit.ts and observation.ts. hook-command.ts
catches AdapterRejectedInput → graceful fallback.
- Phase 7: session-init.ts conditional initAgent guard deleted;
initAgent is idempotent. tests/hooks/context-reinjection-guard
test (validated the deleted conditional) deleted in same PR
per Principle 7.
- Phase 8: fail-loud counter at ~/.claude-mem/state/hook-failures
.json. Atomic write via .tmp + rename. CLAUDE_MEM_HOOK_FAIL_LOUD
_THRESHOLD setting (default 3). On consecutive worker-unreachable
≥ N: process.exit(2). On success: reset to 0. NOT a retry.
- Phase 9: ensureWorkerAliveOnce() module-scope memoization
wrapping ensureWorkerRunning. executeWithWorkerFallback calls
the memoized version.
Minimal validateBody middleware stub at
src/services/worker/http/middleware/validateBody.ts. Plan 06 will
expand with typed inference + error envelope conventions.
Verification: 4/4 grep targets pass. bun run build succeeds.
bun test → 1393 pass / 28 fail / 7 skip; -6 pass attributable
solely to deleted context-reinjection-guard test file. Zero new
failures vs baseline.
Plan: PATHFINDER-2026-04-22/05-hook-surface.md
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* refactor: land PATHFINDER Plan 06 — API surface
One Zod-based validator wrapping every POST/PUT. Rate limiter,
diagnostic endpoints, and shutdown wrappers deleted. Failure-
marking consolidated to one helper.
- Phase 1 (preflight): zod@^3 already installed.
- Phase 2: validateBody middleware confirmed at canonical shape
in src/services/worker/http/middleware/validateBody.ts —
safeParse → 400 { error: 'ValidationError', issues: [...] }
on failure, replaces req.body with parsed value on success.
- Phase 3: Per-route Zod schemas declared at the top of each
route file. 24 POST endpoints across SessionRoutes,
CorpusRoutes, DataRoutes, MemoryRoutes, SearchRoutes,
LogsRoutes, SettingsRoutes now wrap with validateBody().
/api/session/end (Plan 05) confirmed using same middleware.
- Phase 4: validateRequired() deleted from BaseRouteHandler
along with every call site. Inline coercion helpers
(coerceStringArray, coercePositiveInteger) and inline
if (!req.body...) guards deleted across all route files.
- Phase 5: Rate limiter middleware and its registration deleted
from src/services/worker/http/middleware.ts. Worker binds
127.0.0.1:37777 — no untrusted caller.
- Phase 6: viewer.html cached at module init in ViewerRoutes.ts
via fs.readFileSync; served as Buffer with text/html content
type. SKILL.md + per-operation .md files cached in
Server.ts as Map<string, string>; loadInstructionContent
helper deleted. NO fs.watch, NO TTL — process restart is the
cache-invalidation event.
- Phase 7: Four diagnostic endpoints deleted from DataRoutes.ts
— /api/pending-queue (GET), /api/pending-queue/process (POST),
/api/pending-queue/failed (DELETE), /api/pending-queue/all
(DELETE). Helper methods that ONLY served them
(getQueueMessages, getStuckCount, getRecentlyProcessed,
clearFailed, clearAll) deleted from PendingMessageStore.
KEPT: /api/processing-status (observability), /health
(used by ensureWorkerRunning).
- Phase 8: stopSupervisor wrapper deleted from supervisor/index.ts.
GracefulShutdown now calls getSupervisor().stop() directly.
Two functions retained with clear roles:
- performGracefulShutdown — worker-side 6-step shutdown
- runShutdownCascade — supervisor-side child teardown
(process.kill(-pgid), Windows tree-kill, PID-file cleanup)
Each has unique non-trivial logic and a single canonical caller.
- Phase 9: transitionMessagesTo(status, filter) is the sole
failure-marking path on PendingMessageStore. Old methods
markSessionMessagesFailed and markAllSessionMessagesAbandoned
deleted along with all callers (worker-service,
SessionCompletionHandler, tests/zombie-prevention).
Tests updated (Principle 7 same-PR delete): coercion test files
refactored to chain validateBody → handler. Zombie-prevention
tests rewritten to call transitionMessagesTo.
Verification: all 4 grep targets → 0. bun run build succeeds.
bun test → 1393 pass / 28 fail / 7 skip — exact match to
baseline. Zero new failures.
Plan: PATHFINDER-2026-04-22/06-api-surface.md
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* refactor: land PATHFINDER Plan 07 — dead code sweep
ts-prune-driven sweep across the tree after Plans 01-06 landed.
Deleted unused exports, orphan helpers, and one fully orphaned
file. Earlier-plan deletions verified.
Deleted:
- src/utils/bun-path.ts (entire file — getBunPath, getBunPathOrThrow,
isBunAvailable: zero importers)
- bun-resolver.getBunVersionString: zero callers
- PendingMessageStore.retryMessage / resetProcessingToPending /
abortMessage: superseded by transitionMessagesTo (Plan 06 Phase 9)
- EnvManager.MANAGED_CREDENTIAL_KEYS, EnvManager.setCredential:
zero callers
- CodexCliInstaller.checkCodexCliStatus: zero callers; no status
command exists in npx-cli
- Two "REMOVED: cleanupOrphanedSessions" stale-fence comments
Kept (with documented justification):
- Public API surface in dist/sdk/* (parseAgentXml, prompt
builders, ParsedObservation, ParsedSummary, ParseResult,
SUMMARY_MODE_MARKER) — exported via package.json sdk path.
- generateContext / loadContextConfig / token utilities — used
via dynamic await import('../../../context-generator.js') in
worker SearchRoutes.
- MCP_IDE_INSTALLERS, install/uninstall functions for codex/goose
— used via dynamic await import in npx-cli/install.ts +
uninstall.ts (ts-prune cannot trace dynamic imports).
- getExistingChromaIds — active caller in
ChromaSync.backfillMissingSyncs (Plan 04 narrowed scope).
- processPendingQueues / getSessionsWithPendingMessages — active
orphan-recovery caller in worker-service.ts plus
zombie-prevention test coverage.
- StoreAndMarkCompleteResult legacy alias — return-type annotation
in same file.
- All Database.ts barrel re-exports — used downstream.
Earlier-plan verification:
- Plan 03 Phase 9: VERIFIED — src/utils/transcript-parser.ts
is gone; TranscriptParser has 0 references in src/.
- Plan 01 Phase 8: VERIFIED — migration 19 no-op absorbed.
- SessionStore.ts:52-70 consolidation NOT executed (deferred):
the methods are not thin wrappers but ~900 LoC of bodies, and
two methods are documented as intentional mirrors so the
context-generator.cjs bundle stays schema-consistent without
pulling MigrationRunner. Deserves its own plan, not a sweep.
Verification: TranscriptParser → 0; transcript-parser.ts → gone;
no commented-out code markers remain. bun run build succeeds.
bun test → 1393 pass / 28 fail / 7 skip — EXACT match to
baseline. Zero regressions.
Plan: PATHFINDER-2026-04-22/07-dead-code.md
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* chore: remove residual ProcessRegistry comment reference
Plan 07 dead-code sweep missed one comment-level reference to the
deleted in-memory ProcessRegistry class in SessionManager.ts:347.
Rewritten to describe the supervisor.json scope without naming the
deleted class, completing the verification grep target.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: address Greptile review (P1 + 2× P2)
P1 — Plan 05 Phase 3 blocking endpoint was non-functional:
executeWithWorkerFallback used HEALTH_CHECK_TIMEOUT_MS (3 s) for
the POST /api/session/end call, but the server holds the
connection for SERVER_SIDE_SUMMARY_TIMEOUT_MS (30 s). Client
always raced to a "timed out" rejection that isWorkerUnavailable
classified as worker-unreachable, so the hook silently degraded
instead of waiting for summaryStoredEvent.
- Added optional timeoutMs to executeWithWorkerFallback,
forwarded to workerHttpRequest.
- summarize.ts call site now passes 35_000 (5 s above server
hold window).
P2 — ingestSummary({ kind: 'parsed' }) branch was dead code:
ResponseProcessor emitted summaryStoredEvent directly via the
event bus, bypassing the centralized helper that the comment
claimed was the single source.
- ResponseProcessor now calls ingestSummary({ kind: 'parsed',
sessionDbId, messageId, contentSessionId, parsed }) so the
event-emission path is single-sourced.
- ingestSummary's requireContext() resolution moved inside the
'queue' branch (the only branch that needs sessionManager /
dbManager). 'parsed' is a pure event-bus emission and
doesn't need worker-internal context — fixes mocked
ResponseProcessor unit tests that don't call
setIngestContext.
P2 — isWorkerFallback could false-positive on legitimate API
responses whose schema includes { continue: true, ... }:
- Added a Symbol.for('claude-mem/worker-fallback') brand to
WorkerFallback. isWorkerFallback now checks the brand, not
a duck-typed property name.
Verification: bun run build succeeds. bun test → 1393 pass /
28 fail / 7 skip — exact baseline match. Zero new failures.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: address Greptile iteration 2 (P1 + P2)
P1 — summaryStoredEvent fired regardless of whether the row was
persisted. ResponseProcessor's call to ingestSummary({ kind:
'parsed' }) ran for every parsed.kind === 'summary' even when
result.summaryId came back null (e.g. FK violation, null
memory_session_id at commit). The blocking /api/session/end
endpoint then returned { ok: true } and the Stop hook logged
'Summary stored' for a non-existent row.
- Gate ingestSummary call on (parsed.data.skipped ||
session.lastSummaryStored). Skipped summaries are an explicit
no-op bypass and still confirm; real summaries only confirm
when storage actually wrote a row.
- Non-skipped + summaryId === null path logs a warn and lets
the server-side timeout (504) surface to the hook instead of
a false ok:true.
P2 — PendingMessageStore.enqueue() returns 0 when INSERT OR
IGNORE suppresses a duplicate (the UNIQUE(session_id, tool_use_id)
constraint added by Plan 01 Phase 1). The two callers
(SessionManager.queueObservation and queueSummarize) previously
logged 'ENQUEUED messageId=0' which read like a row was inserted.
- Branch on messageId === 0 and emit a 'DUP_SUPPRESSED' debug
log instead of the misleading ENQUEUED line. No behavior
change — the duplicate is still correctly suppressed by the
DB (Principle 3); only the log surface is corrected.
- confirmProcessed is never called with the enqueue() return
value (it operates on session.processingMessageIds[] from
claimNextMessage), so no caller is broken; the visibility
fix prevents future misuse.
Verification: bun run build succeeds. bun test → 1393 pass /
28 fail / 7 skip — exact baseline match. Zero new failures.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: address Greptile iteration 3 (P1 + 2× P2)
- P1 worker-service.ts: wire ensureGeneratorRunning into the ingest
context after SessionRoutes is constructed. setIngestContext runs
before routes exist, so transcript-watcher observations queued via
ingestObservation() had no way to auto-start the SDK generator.
Added attachIngestGeneratorStarter() to patch the callback in.
- P2 shared.ts: IngestEventBus now sets maxListeners to 0. Concurrent
/api/session/end calls register one listener each and clean up on
completion, so the default-10 warning fires spuriously under normal
load.
- P2 SessionRoutes.ts: handleObservationsByClaudeId now delegates to
ingestObservation() instead of duplicating skip-tool / meta /
privacy / queue logic. Single helper, matching the Plan 03 goal.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: address Greptile iteration 4 (P1 tool-pair + P2 parse/path/doc)
- processor.handleToolResult: restore in-memory tool-use→tool-result
pairing via session.pendingTools for schemas (e.g. Codex) whose
tool_result events carry only tool_use_id + output. Without this,
neither handler fired — all tool observations silently dropped.
- processor.maybeParseJson: return raw string on parse failure instead
of throwing. Previously a single malformed JSON-shaped field caused
handleLine's outer catch to discard the entire transcript line.
- watcher.deepestNonGlobAncestor: split on / and \\, emit empty string
for purely-glob inputs so the caller skips the watch instead of
anchoring fs.watch at the filesystem root. Windows-compatible.
- PendingMessageStore.enqueue: tighten docstring — callers today only
log on the returned id; the SessionManager branches on id === 0.
* fix: forward tool_use_id through ingestObservation (Greptile iter 5)
P1 — Plan 01's UNIQUE(content_session_id, tool_use_id) dedup never
fired because the new shared ingest path dropped the toolUseId before
queueObservation. SQLite treats NULL values as distinct for UNIQUE,
so every replayed transcript line landed a duplicate row.
- shared.ingestObservation: forward payload.toolUseId to
queueObservation so INSERT OR IGNORE can actually collapse.
- SessionRoutes.handleObservationsByClaudeId: destructure both
tool_use_id (HTTP convention) and toolUseId (JS convention) from
req.body and pass into ingestObservation.
- observationsByClaudeIdSchema: declare both keys explicitly so the
validator doesn't rely on .passthrough() alone.
* fix: drop dead pairToolUsesByJoin, close session-end listener race
- PendingMessageStore: delete pairToolUsesByJoin. The method was never
called and its self-join semantics are structurally incompatible
with UNIQUE(content_session_id, tool_use_id): INSERT OR IGNORE
collapses any second row with the same pair, so a self-join can
only ever match a row to itself. In-memory pendingTools in
processor.ts remains the pairing path for split-event schemas.
- IngestEventBus: retain a short-lived (60s) recentStored map keyed
by sessionId. Populated on summaryStoredEvent emit, evicted on
consume or TTL.
- handleSessionEnd: drain the recent-events buffer before attaching
the listener. Closes the register-after-emit race where the summary
can persist between the hook's summarize POST and its session/end
POST — previously that window returned 504 after the 30s timeout.
* chore: merge origin/main into vivacious-teeth
Resolves conflicts with 15 commits on main (v12.3.9, security
observation types, Telegram notifier, PID-reuse worker start-guard).
Conflict resolution strategy:
- plugin/hooks/hooks.json, plugin/scripts/*.cjs, plugin/ui/viewer-bundle.js:
kept ours — PATHFINDER Plan 05 deletes the for-i-in-1-to-20 curl retry
loops and the built artifacts regenerate on build.
- src/cli/handlers/summarize.ts: kept ours — Plan 05 blocking
POST /api/session/end supersedes main's fire-and-forget path.
- src/services/worker-service.ts: kept ours — Plan 05 ingest bus +
summaryStoredEvent supersedes main's SessionCompletionHandler DI
refactor + orphan-reaper fallback.
- src/services/worker/http/routes/SessionRoutes.ts: kept ours — same
reason; generator .finally() Stop-hook self-clean is a guard for a
path our blocking endpoint removes.
- src/services/worker/http/routes/CorpusRoutes.ts: merged — added
security_alert / security_note to ALLOWED_CORPUS_TYPES (feature from
#2084) while preserving our Zod validateBody schema.
Typecheck: 294 errors (vs 298 pre-merge). No new errors introduced; all
remaining are pre-existing (Component-enum gaps, DOM lib for viewer,
bun:sqlite types).
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: address Greptile P2 findings
1) SessionRoutes.handleSessionEnd was the only route handler not wrapped
in wrapHandler — synchronous exceptions would hang the client rather
than surfacing as 500s. Wrap it like every other handler.
2) processor.handleToolResult only consumed the session.pendingTools
entry when the tool_result arrived without a toolName. In the
split-schema path where tool_result carries both toolName and toolId,
the entry was never deleted and the map grew for the life of the
session. Consume the entry whenever toolId is present.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: typing cleanup and viewer tsconfig split for PR feedback
- Add explicit return types for SessionStore query methods
- Exclude src/ui/viewer from root tsconfig, give it its own DOM-typed config
- Add bun to root tsconfig types, plus misc typing tweaks flagged by Greptile
- Rebuilt plugin/scripts/* artifacts
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: address Greptile P2 findings (iter 2)
- PendingMessageStore.transitionMessagesTo: require sessionDbId (drop
the unscoped-drain branch that would nuke every pending/processing
row across all sessions if a future caller omitted the filter).
- IngestEventBus.takeRecentSummaryStored: make idempotent — keep the
cached event until TTL eviction so a retried Stop hook's second
/api/session/end returns immediately instead of hanging 30 s.
- TranscriptWatcher fs.watch callback: skip full glob scan for paths
already tailed (JSONL appends fire on every line; only unknown
paths warrant a rescan).
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: call finalizeSession in terminal session paths (Greptile iter 3)
terminateSession and runFallbackForTerminatedSession previously called
SessionCompletionHandler.finalizeSession before removeSessionImmediate;
the refactor dropped those calls, leaving sdk_sessions.status='active'
for every session killed by wall-clock limit, unrecoverable error, or
exhausted fallback chain. The deleted reapStaleSessions interval was
the only prior backstop.
Re-wires finalizeSession (idempotent: marks completed, drains pending,
broadcasts) into both paths; no reaper reintroduced.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: GC failed pending_messages rows at startup (Greptile iter 4)
Plan 07 deleted clearFailed/clearFailedOlderThan as "dead code", but
with the periodic sweep also removed, nothing reaps status='failed'
rows now — they accumulate indefinitely. Since claimNextMessage's
self-healing subquery scans this table, unbounded growth degrades
claim latency over time.
Re-introduces clearFailedOlderThan and calls it once at worker startup
(not a reaper — one-shot, idempotent). 7-day retention keeps enough
history for operator inspection while bounding the table.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: finalize sessions on normal exit; cleanup hoist; share handler (iter 5)
1. startSessionProcessor success branch now calls completionHandler.
finalizeSession before removeSessionImmediate. Hooks-disabled installs
(and any Stop hook that fails before POST /api/sessions/complete) no
longer leave sdk_sessions rows as status='active' forever. Idempotent
— a subsequent /api/sessions/complete is a no-op.
2. Hoist SessionRoutes.handleSessionEnd cleanup declaration above the
closures that reference it (TDZ safety; safe at runtime today but
fragile if timeout ever shrinks).
3. SessionRoutes now receives WorkerService's shared SessionCompletionHandler
instead of constructing its own — prevents silent divergence if the
handler ever becomes stateful.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: stop runaway crash-recovery loop on dead sessions
Two distinct bugs were combining to keep a dead session restarting forever:
Bug 1 (uncaught "The operation was aborted."):
child_process.spawn emits 'error' asynchronously for ENOENT/EACCES/abort
signal aborts. spawnSdkProcess() never attached an 'error' listener, so
any async spawn failure became uncaughtException and escaped to the
daemon-level handler. Attach an 'error' listener immediately after spawn,
before the !child.pid early-return, so async spawn errors are logged
(with errno code) and swallowed locally.
Bug 2 (sliding-window limiter never trips on slow restart cadence):
RestartGuard tripped only when restartTimestamps.length exceeded
MAX_WINDOWED_RESTARTS (10) within RESTART_WINDOW_MS (60s). With the 8s
exponential-backoff cap, only ~7-8 restarts fit in the window, so a dead
session that fail-restart-fail-restart on 8s cycles would loop forever
(consecutiveRestarts climbing past 30+ in observed logs). Add a
consecutiveFailures counter that increments on every restart and resets
only on recordSuccess(). Trip when consecutive failures exceed
MAX_CONSECUTIVE_FAILURES (5) — meaning 5 restarts with zero successful
processing in between proves the session is dead. Both guards now run in
parallel: tight loops still trip the windowed cap; slow loops trip the
consecutive-failure cap.
Also: when the SessionRoutes path trips the guard, drain pending messages
to 'abandoned' so the session does not reappear in
getSessionsWithPendingMessages and trigger another auto-start cycle. The
worker-service.ts path already does this via terminateSession.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* perf: streamline worker startup and consolidate database connections
1. Database Pooling: Modified DatabaseManager, SessionStore, and SessionSearch to share a single bun:sqlite connection, eliminating redundant file descriptors.
2. Non-blocking Startup: Refactored WorktreeAdoption and Chroma backfill to run in the background (fire-and-forget), preventing them from stalling core initialization.
3. Diagnostic Routes: Added /api/chroma/status and bypassed the initialization guard for health/readiness endpoints to allow diagnostics during startup.
4. Robust Search: Implemented reliable SQLite FTS5 fallback in SearchManager for when Chroma (uvx) fails or is unavailable.
5. Code Cleanup: Removed redundant loopback MCP checks and mangled initialization logic from WorkerService.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: hard-exclude observer-sessions from hooks; bundle migration 29 (#2124)
* fix: hard-exclude observer-sessions from hooks; backfill bundle migrations
Stop hook + SessionEnd hook were storing the SDK observer's own
init/continuation/summary prompts in user_prompts, leaking into the
viewer (meta-observation regression). 25 such rows accumulated.
- shouldTrackProject: hard-reject OBSERVER_SESSIONS_DIR (and its subtree)
before consulting user-configured exclusion globs.
- summarize.ts (Stop) and session-complete.ts (SessionEnd): early-return
when shouldTrackProject(cwd) is false, so the observer's own hooks
cannot bootstrap the worker or queue a summary against the meta-session.
- SessionRoutes: cap user-prompt body at 256 KiB at the session-init
boundary so a runaway observer prompt cannot blow up storage.
- SessionStore: add migration 29 (UNIQUE(memory_session_id, content_hash)
on observations) inline so bundled artifacts (worker-service.cjs,
context-generator.cjs) stay schema-consistent — without it, the
ON CONFLICT clause in observation inserts throws.
- spawnSdkProcess: stdio[stdin] from 'ignore' to 'pipe' so the
supervisor can actually feed the observer's stdin.
Also rebuilds plugin/scripts/{worker-service,context-generator}.cjs.
* fix: walk back to UTF-8 boundary on prompt truncation (Greptile P2)
Plain Buffer.subarray at MAX_USER_PROMPT_BYTES can land mid-codepoint,
which the utf8 decoder silently rewrites to U+FFFD. Walk back over any
continuation bytes (0b10xxxxxx) before decoding so the truncated prompt
ends on a valid sequence boundary instead of a replacement character.
* fix: cross-platform observer-dir containment; clarify SDK stdin pipe
claude-review feedback on PR #2124.
- shouldTrackProject: literal `cwd.startsWith(OBSERVER_SESSIONS_DIR + '/')`
hard-coded a POSIX separator and missed Windows backslash paths plus any
trailing-slash variance. Switched to a path.relative-based isWithin()
helper so Windows hook input under observer-sessions\\... is also excluded.
- spawnSdkProcess: added a comment explaining why stdin must be 'pipe' —
SpawnedSdkProcess.stdin is typed NonNullable and the Claude Agent SDK
consumes that pipe; 'ignore' would null it and the null-check below
would tear the child down on every spawn.
* fix: make Stop hook fire-and-forget; remove dead /api/session/end
The Stop hook was awaiting a 35-second long-poll on /api/session/end,
which the worker held open until the summary-stored event fired (or its
30s server-side timeout elapsed). Followed by another await on
/api/sessions/complete. Three sequential awaits, the middle one a 30s
hold — not fire-and-forget despite repeated requests.
The Stop hook now does ONE thing: POST /api/sessions/summarize to
queue the summary work and return. The worker drives the rest async.
Session-map cleanup is performed by the SessionEnd handler
(session-complete.ts), not duplicated here.
- summarize.ts: drop the /api/session/end long-poll and the trailing
/api/sessions/complete await; ~40 lines removed; unused
SessionEndResponse interface gone; header comment rewritten.
- SessionRoutes: delete handleSessionEnd, sessionEndSchema, the
SERVER_SIDE_SUMMARY_TIMEOUT_MS constant, and the /api/session/end
route registration. Drop the now-unused ingestEventBus and
SummaryStoredEvent imports.
- ResponseProcessor + shared.ts + worker-utils.ts: update stale
comments that referenced the dead endpoint. The IngestEventBus is
left in place dormant (no listeners) for follow-up cleanup so this
PR stays focused on the blocker.
Bundle artifact (worker-service.cjs) rebuilt via build-and-sync.
Verification:
- grep '/api/session/end' plugin/scripts/worker-service.cjs → 0
- grep 'timeoutMs:35' plugin/scripts/worker-service.cjs → 0
- Worker restarted clean, /api/health ok at pid 92368
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* deps: bump all dependencies to latest including majors
Upgrades: React 18→19, Express 4→5, Zod 3→4, TypeScript 5→6,
@types/node 20→25, @anthropic-ai/claude-agent-sdk 0.1→0.2,
@clack/prompts 0.9→1.2, plus minors. Adds Daily Maintenance section
to CLAUDE.md mandating latest-version policy across manifests.
Express 5 surfaced a race in Server.listen() where the 'error' handler
was attached after listen() was invoked; refactored to use
http.createServer with both 'error' and 'listening' handlers attached
before listen(), restoring port-conflict rejection semantics.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: surface real chroma errors and add deep status probe
Replace the misleading "Vector search failed - semantic search unavailable.
Install uv... restart the worker." string in SearchManager with the actual
exception text from chroma_query_documents. The lying message blamed `uv`
for any failure — even when the real cause was a chroma-mcp transport
timeout, an empty collection, or a dead subprocess.
Also add /api/chroma/status?deep=1 backed by a new
ChromaMcpManager.probeSemanticSearch() that round-trips a real query
(chroma_list_collections + chroma_query_documents) instead of just
checking the stdio handshake. The cheap default path is unchanged.
Includes the diagnostic plan (PLAN-fix-mcp-search.md) and updated test
fixtures for the new structured failure message.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* chore: rebuild worker-service bundle to match merged src
Bundle was stale after the squash merge of #2124 — it still contained
the old "Install uv... semantic search unavailable" string and lacked
probeSemanticSearch. Rebuilt via bun run build-and-sync.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* docs: address coderabbit feedback on PLAN-fix-mcp-search.md
- replace machine-specific /Users/alexnewman absolute paths with portable
<repo-root> placeholder (MD-style portability)
- add blank lines around the TypeScript fenced block (MD031)
- tag the bare fenced block with `text` (MD040)
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix: prevent memory_session_id from equaling content_session_id
The bug: memory_session_id was initialized to contentSessionId as a
"placeholder for FK purposes". This caused the SDK resume logic to
inject memory agent messages into the USER's Claude Code transcript,
corrupting their conversation history.
Root cause:
- SessionStore.createSDKSession initialized memory_session_id = contentSessionId
- SDKAgent checked memorySessionId !== contentSessionId but this check
only worked if the session was fetched fresh from DB
The fix:
- SessionStore: Initialize memory_session_id as NULL, not contentSessionId
- SDKAgent: Simple truthy check !!session.memorySessionId (NULL = fresh start)
- Database migration: Ran UPDATE to set memory_session_id = NULL for 1807
existing sessions that had the bug
Also adds [ALIGNMENT] logging across the session lifecycle to help debug
session continuity issues:
- Hook entry: contentSessionId + promptNumber
- DB lookup: contentSessionId → memorySessionId mapping proof
- Resume decision: shows which memorySessionId will be used for resume
- Capture: logs when memorySessionId is captured from first SDK response
UI: Added "Alignment" quick filter button in LogsModal to show only
alignment logs for debugging session continuity.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor: improve error handling in worker-service.ts
- Fix GENERIC_CATCH anti-patterns by logging full error objects instead of just messages
- Add [ANTI-PATTERN IGNORED] markers for legitimate cases (cleanup, hot paths)
- Simplify error handling comments to be more concise
- Improve httpShutdown() error discrimination for ECONNREFUSED
- Reduce LARGE_TRY_BLOCK issues in initialization code
Part of anti-pattern cleanup plan (132 total issues)
* refactor: improve error logging in SearchManager.ts
- Pass full error objects to logger instead of just error.message
- Fixes PARTIAL_ERROR_LOGGING anti-patterns (10 instances)
- Better debugging visibility when Chroma queries fail
Part of anti-pattern cleanup (133 remaining)
* refactor: improve error logging across SessionStore and mcp-server
- SessionStore.ts: Fix error logging in column rename utility
- mcp-server.ts: Log full error objects instead of just error.message
- Improve error handling in Worker API calls and tool execution
Part of anti-pattern cleanup (133 remaining)
* Refactor hooks to streamline error handling and loading states
- Simplified error handling in useContextPreview by removing try-catch and directly checking response status.
- Refactored usePagination to eliminate try-catch, improving readability and maintaining error handling through response checks.
- Cleaned up useSSE by removing unnecessary try-catch around JSON parsing, ensuring clarity in message handling.
- Enhanced useSettings by streamlining the saving process, removing try-catch, and directly checking the result for success.
* refactor: add error handling back to SearchManager Chroma calls
- Wrap queryChroma calls in try-catch to prevent generator crashes
- Log Chroma errors as warnings and fall back gracefully
- Fixes generator failures when Chroma has issues
- Part of anti-pattern cleanup recovery
* feat: Add generator failure investigation report and observation duplication regression report
- Created a comprehensive investigation report detailing the root cause of generator failures during anti-pattern cleanup, including the impact, investigation process, and implemented fixes.
- Documented the critical regression causing observation duplication due to race conditions in the SDK agent, outlining symptoms, root cause analysis, and proposed fixes.
* fix: address PR #528 review comments - atomic cleanup and detector improvements
This commit addresses critical review feedback from PR #528:
## 1. Atomic Message Cleanup (Fix Race Condition)
**Problem**: SessionRoutes.ts generator error handler had race condition
- Queried messages then marked failed in loop
- If crash during loop → partial marking → inconsistent state
**Solution**:
- Added `markSessionMessagesFailed()` to PendingMessageStore.ts
- Single atomic UPDATE statement replaces loop
- Follows existing pattern from `resetProcessingToPending()`
**Files**:
- src/services/sqlite/PendingMessageStore.ts (new method)
- src/services/worker/http/routes/SessionRoutes.ts (use new method)
## 2. Anti-Pattern Detector Improvements
**Problem**: Detector didn't recognize logger.failure() method
- Lines 212 & 335 already included "failure"
- Lines 112-113 (PARTIAL_ERROR_LOGGING detection) did not
**Solution**: Updated regex patterns to include "failure" for consistency
**Files**:
- scripts/anti-pattern-test/detect-error-handling-antipatterns.ts
## 3. Documentation
**PR Comment**: Added clarification on memory_session_id fix location
- Points to SessionStore.ts:1155
- Explains why NULL initialization prevents message injection bug
## Review Response
Addresses "Must Address Before Merge" items from review:
✅ Clarified memory_session_id bug fix location (via PR comment)
✅ Made generator error handler message cleanup atomic
❌ Deferred comprehensive test suite to follow-up PR (keeps PR focused)
## Testing
- Build passes with no errors
- Anti-pattern detector runs successfully
- Atomic cleanup follows proven pattern from existing methods
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* fix: FOREIGN KEY constraint and missing failed_at_epoch column
Two critical bugs fixed:
1. Missing failed_at_epoch column in pending_messages table
- Added migration 20 to create the column
- Fixes error when trying to mark messages as failed
2. FOREIGN KEY constraint failed when storing observations
- All three agents (SDK, Gemini, OpenRouter) were passing
session.contentSessionId instead of session.memorySessionId
- storeObservationsAndMarkComplete expects memorySessionId
- Added null check and clear error message
However, observations still not saving - see investigation report.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* Refactor hook input parsing to improve error handling
- Added a nested try-catch block in new-hook.ts, save-hook.ts, and summary-hook.ts to handle JSON parsing errors more gracefully.
- Replaced direct error throwing with logging of the error details using logger.error.
- Ensured that the process exits cleanly after handling input in all three hooks.
* docs: add monolith refactor report with system breakdown
Comprehensive analysis of codebase identifying:
- 14 files over 500 lines requiring refactoring
- 3 critical monoliths (SessionStore, SearchManager, worker-service)
- 80% code duplication across agent files
- 5-phase refactoring roadmap with domain-based architecture
* docs: update monolith report post session-logging merge
- SessionStore grew to 2,011 lines (49 methods) - highest priority
- SearchManager reduced to 1,778 lines (improved)
- Agent files reduced by ~45 lines combined
- Added trend indicators and post-merge observations
- Core refactoring proposal remains valid
* refactor(sqlite): decompose SessionStore into modular architecture
Extract the 2011-line SessionStore.ts monolith into focused, single-responsibility
modules following grep-optimized progressive disclosure pattern:
New module structure:
- sessions/ - Session creation and retrieval (create.ts, get.ts, types.ts)
- observations/ - Observation storage and queries (store.ts, get.ts, recent.ts, files.ts, types.ts)
- summaries/ - Summary storage and queries (store.ts, get.ts, recent.ts, types.ts)
- prompts/ - User prompt management (store.ts, get.ts, types.ts)
- timeline/ - Cross-entity timeline queries (queries.ts)
- import/ - Bulk import operations (bulk.ts)
- migrations/ - Database migrations (runner.ts)
New coordinator files:
- Database.ts - ClaudeMemDatabase class with re-exports
- transactions.ts - Atomic cross-entity transactions
- Named re-export facades (Sessions.ts, Observations.ts, etc.)
Key design decisions:
- All functions take `db: Database` as first parameter (functional style)
- Named re-exports instead of index.ts for grep-friendliness
- SessionStore retained as backward-compatible wrapper
- Target file size: 50-150 lines (60% compliance)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor(agents): extract shared logic into modular architecture
Consolidate duplicate code across SDKAgent, GeminiAgent, and OpenRouterAgent
into focused utility modules. Total reduction: 500 lines (29%).
New modules in src/services/worker/agents/:
- ResponseProcessor.ts: Atomic DB transactions, Chroma sync, SSE broadcast
- ObservationBroadcaster.ts: SSE event formatting and dispatch
- SessionCleanupHelper.ts: Session state cleanup and stuck message reset
- FallbackErrorHandler.ts: Provider error detection for fallback logic
- types.ts: Shared interfaces (WorkerRef, SSE payloads, StorageResult)
Bug fix: SDKAgent was incorrectly using obs.files instead of obs.files_read
and hardcoding files_modified to empty array.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor(search): extract search strategies into modular architecture
Decompose SearchManager into focused strategy pattern with:
- SearchOrchestrator: Coordinates strategy selection and fallback
- ChromaSearchStrategy: Vector semantic search via ChromaDB
- SQLiteSearchStrategy: Filter-only queries for date/project/type
- HybridSearchStrategy: Metadata filtering + semantic ranking
- ResultFormatter: Markdown table formatting for results
- TimelineBuilder: Chronological timeline construction
- Filter modules: DateFilter, ProjectFilter, TypeFilter
SearchManager now delegates to new infrastructure while maintaining
full backward compatibility with existing public API.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor(context): decompose context-generator into modular architecture
Extract 660-line monolith into focused components:
- ContextBuilder: Main orchestrator (~160 lines)
- ContextConfigLoader: Configuration loading
- TokenCalculator: Token budget calculations
- ObservationCompiler: Data retrieval and query building
- MarkdownFormatter/ColorFormatter: Output formatting
- Section renderers: Header, Timeline, Summary, Footer
Maintains full backward compatibility - context-generator.ts now
delegates to new ContextBuilder while preserving public API.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor(worker): decompose worker-service into modular infrastructure
Split 2000+ line monolith into focused modules:
Infrastructure:
- ProcessManager: PID files, signal handlers, child process cleanup
- HealthMonitor: Port checks, health polling, version matching
- GracefulShutdown: Coordinated cleanup on exit
Server:
- Server: Express app setup, core routes, route registration
- Middleware: Re-exports from existing middleware
- ErrorHandler: Centralized error handling with AppError class
Integrations:
- CursorHooksInstaller: Full Cursor IDE integration (registry, hooks, MCP)
WorkerService now acts as thin coordinator wiring all components together.
Maintains full backward compatibility with existing public API.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* Refactor session queue processing and database interactions
- Implement claim-and-delete pattern in SessionQueueProcessor to simplify message handling and eliminate duplicate processing.
- Update PendingMessageStore to support atomic claim-and-delete operations, removing the need for intermediate processing states.
- Introduce storeObservations method in SessionStore for simplified observation and summary storage without message tracking.
- Remove deprecated methods and clean up session state management in worker agents.
- Adjust response processing to accommodate new storage patterns, ensuring atomic transactions for observations and summaries.
- Remove unnecessary reset logic for stuck messages due to the new queue handling approach.
* Add duplicate observation cleanup script
Script to clean up duplicate observations created by the batching bug
where observations were stored once per message ID instead of once per
observation. Includes safety checks to always keep at least one copy.
Usage:
bun scripts/cleanup-duplicates.ts # Dry run
bun scripts/cleanup-duplicates.ts --execute # Delete duplicates
bun scripts/cleanup-duplicates.ts --aggressive # Ignore time window
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(sqlite): add comprehensive test suite for SQLite repositories
Add 44 tests across 5 test files covering:
- Sessions: CRUD operations and schema validation
- Observations: creation, retrieval, filtering, and ordering
- Prompts: persistence and association with observations
- Summaries: generation tracking and session linkage
- Transactions: context management and rollback behavior
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(worker): add comprehensive test suites for worker agent modules
Add test coverage for response-processor, observation-broadcaster,
session-cleanup-helper, and fallback-error-handler agents. Fix type
import issues across search module (use `import type` for type-only
imports) and update worker-service main module detection for ESM/CJS
compatibility.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(search): add comprehensive test suites for search module
Add test coverage for the refactored search architecture:
- SearchOrchestrator: query coordination and caching
- ResultFormatter: pagination, sorting, and field mapping
- SQLiteSearchStrategy: database search operations
- ChromaSearchStrategy: vector similarity search
- HybridSearchStrategy: combined search with score fusion
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(context): add comprehensive test suites for context-generator modules
Add test coverage for the modular context-generator architecture:
- context-builder.test.ts: Tests for context building and result assembly
- observation-compiler.test.ts: Tests for observation compilation with privacy tags
- token-calculator.test.ts: Tests for token budget calculations
- formatters/markdown-formatter.test.ts: Tests for markdown output formatting
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(infrastructure): add comprehensive test suites for worker infrastructure modules
Add test coverage for graceful-shutdown, health-monitor, and process-manager
modules extracted during the worker-service refactoring. All 32 tests pass.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(server): add comprehensive test suites for server modules
Add test coverage for Express server infrastructure:
- error-handler.test.ts: Tests error handling middleware including
validation errors, database errors, and async error handling
- server.test.ts: Tests server initialization, middleware configuration,
and route mounting for all API endpoints
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* chore(package): add test scripts for modular test suites
Add npm run scripts to simplify running tests:
- test: run all tests
- test:sqlite, test:agents, test:search, test:context, test:infra, test:server
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* build assets
* feat(tests): add detailed failure analysis reports for session ID refactor, validation, and store tests
- Created reports for session ID refactor test failures, highlighting 8 failures due to design mismatches.
- Added session ID usage validation report detailing 10 failures caused by outdated assumptions in tests.
- Documented session store test failures, focusing on foreign key constraint violations in 2 tests.
- Compiled a comprehensive test suite report summarizing overall test results, including 28 failing tests across various categories.
* fix(tests): align session ID tests with NULL-based initialization
Update test expectations to match implementation where memory_session_id
starts as NULL (not equal to contentSessionId) per architecture decision
that memory_session_id must NEVER equal contentSessionId.
Changes:
- session_id_refactor.test.ts: expect NULL initial state, add updateMemorySessionId() calls
- session_id_usage_validation.test.ts: update placeholder detection to check !== null
- session_store.test.ts: add updateMemorySessionId() before storeObservation/storeSummary
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix(tests): update GeminiAgent tests with correct field names and mocks
- Rename deprecated fields: claudeSessionId → contentSessionId,
sdkSessionId → memorySessionId, pendingProcessingIds → pendingMessages
- Add missing required ActiveSession fields
- Add storeObservations mock (plural) for ResponseProcessor compatibility
- Fix settings mock to use correct CLAUDE_MEM_GEMINI_RATE_LIMITING_ENABLED key
- Add await to rejects.toThrow assertion
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat(tests): add logger imports and fix coverage test exclusions
Phase 3 of test suite fixes:
- Add logger imports to 34 high-priority source files (SQLite, worker, context)
- Exclude CLI-facing files from console.log check (worker-service.ts,
integrations/*Installer.ts) as they use console.log intentionally for
interactive user output
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* docs: update SESSION_ID_ARCHITECTURE for NULL-based initialization
Update documentation to reflect that memory_session_id starts as NULL,
not as a placeholder equal to contentSessionId. This matches the
implementation decision that memory_session_id must NEVER equal
contentSessionId to prevent injecting memory messages into user transcripts.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* chore(deps): update esbuild and MCP SDK
- esbuild: 0.25.12 → 0.27.2 (fixes minifyIdentifiers issue)
- @modelcontextprotocol/sdk: 1.20.1 → 1.25.1
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* build assets and updates
* chore: remove bun.lock and add to gitignore
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
Alex Newman