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Author SHA1 Message Date
Alex Newman ef1b427a2a fix: update timeline deny message to route to smart tools 
The deny reason is the routing surface — show all cheaper exits:
semantic priming from the timeline, get_observations for details,
and smart_outline/smart_unfold for current code structure.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-07 00:25:55 -07:00
Alex Newman 455aeaf654 fix: remove per-session gate, use permissionDecision deny for every read 
The per-session FileReadGate was never requested and broke the cost
savings loop — subsequent reads in the same session silently bypassed
the timeline, hiding newly created observations.

Now the timeline fires on every read that has observations, using the
hook contract's permissionDecision: "deny" with the timeline as the
reason (exit 0 + JSON) instead of exit code 2 + stderr.

- Delete FileReadGate.ts entirely
- Remove /api/file-context/gate endpoint from DataRoutes
- Switch handler from exit code 2 to permissionDecision: "deny"
- Restore permissionDecision fields to HookResult
- Eliminate one HTTP round-trip per read (no gate check needed)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-06 22:05:40 -07:00
Alex Newman 31910fb265 fix: address PR review feedback — path safety, SQL injection, gate scoping 
- Resolve relative filePath against input.cwd before statSync; early-return on ENOENT
- Replace LIKE '%path%' with exact json_each equality to prevent false matches
- Sanitize and parameterize LIMIT to prevent NaN SQL errors
- Fix day-sorting to use earliest epoch in group, not first (specificity-sorted) item
- Use exact path equality in deduplicateObservations instead of substring includes
- Scope FileReadGate by session+cwd to prevent worktree collisions
- Refresh lastAccess TTL on active sessions; throttle prune to every 50 calls
- Type params as (string | number)[] instead of any[]
- Remove unused permissionDecision fields from HookResult

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-06 17:29:59 -07:00
Alex Newman a60f79c44d feat: file-size threshold and observation dedup for timeline gate 
- Skip gate for files under 1,500 bytes — timeline (~370 tokens) costs
  more than just reading small files directly
- Deduplicate observations by memory_session_id (one per session)
- Rank by specificity: files_modified > files_read, fewer tagged files > many
- Fetch 40 candidates, dedup/score down to 15 for display
- Reduce default by-file query limit from 30 to 15

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-06 13:29:28 -07:00
Alex Newman 2b8fbcf50e Merge main into thedotmack/file-read-timeline-inject 
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-05 03:00:06 -07:00
Alessandro Costa 876cc4d837 feat: semantic context injection via Chroma on UserPromptSubmit (#1568) 
* feat: semantic context injection via Chroma on every UserPromptSubmit

On each prompt, queries ChromaDB for the top-N most relevant past
observations and injects them as additionalContext. Replaces the
recency-based "last N observations" approach with relevance-based
semantic search.

Changes:
- session-init.ts: After session init, query /api/context/semantic
  with user's prompt text. If results found, return as
  hookSpecificOutput with hookEventName 'UserPromptSubmit'.
- SearchRoutes.ts: New GET /api/context/semantic endpoint that queries
  SearchManager with format='json' and formats results as markdown.
- SettingsDefaultsManager.ts: New settings CLAUDE_MEM_SEMANTIC_INJECT
  (default: true) and CLAUDE_MEM_SEMANTIC_INJECT_LIMIT (default: 5).

Key behaviors:
- Fires on every UserPromptSubmit (not just SessionStart)
- Minimum prompt length: 20 chars (skips "ok", "yes", etc.)
- Skips media-only prompts
- Graceful degradation: if worker/Chroma unavailable, no injection
- Survives /clear: re-injects on next prompt (not session-bound)
- Uses workerHttpRequest (v10.6.3 API, not raw fetch)

Production data (23 days, 3,400+ observations):
- Before: 8 most recent observations (often irrelevant to current topic)
- After: 5 most relevant observations (semantic match)
- Token cost: ~1800 → ~800-1200 per injection

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: address CodeRabbit review on PR #1568

- session-init: don't skip semantic injection when contextInjected=true
  (only skip agent re-init, semantic lookup must run every prompt)
- session-init: normalize SEMANTIC_INJECT toggle via String().toLowerCase()
- semantic endpoint: change from GET to POST to avoid URL-length limits
  and prompt exposure in access logs. Handler accepts both body and query
  for backwards compatibility.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Alessandro Costa <alessandro@claudio.dev>
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-04 15:16:46 -07:00
Alessandro Costa 64cce2bf10 fix: resolve 3 upstream bugs (summarize, ChromaSync, HealthMonitor) (#1566) 
* fix: resolve 3 upstream bugs in summarize, ChromaSync, and HealthMonitor

1. summarize.ts: Skip summary when transcript has no assistant message.
   Prevents error loop where empty transcripts cause repeated failed
   summarize attempts (~30 errors/day observed in production).

2. ChromaSync.ts: Fallback to chroma_update_documents when add fails
   with "IDs already exist". Handles partial writes after MCP timeout
   without waiting for next backfill cycle.

3. HealthMonitor.ts: Replace HTTP-based isPortInUse with atomic socket
   bind on Unix. Eliminates TOCTOU race when two sessions start
   simultaneously (HTTP check is non-atomic — both see "port free"
   before either completes listen()). Updated tests accordingly.

All three bugs are pre-existing in v10.5.5. Confirmed via log analysis
of 543K lines over 17 days of production usage across two servers.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore: add CONTRIB_NOTES.md to gitignore

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: address CodeRabbit review on PR #1566

- HealthMonitor: add APPROVED OVERRIDE annotation for Win32 HTTP fallback
- ChromaSync: replace chroma_update_documents with delete+add for proper
  upsert (update only modifies existing IDs, silently ignores missing ones)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Alessandro Costa <alessandro@claudio.dev>
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-04 15:15:08 -07:00
Alex Newman a2ac116aac fix: move summary wait + session-complete into Stop hook to prevent lost summaries 
SessionEnd has a 1.5s hardcoded cap from Claude Code (CLAUDE_CODE_SESSIONEND_HOOKS_TIMEOUT_MS),
making it unsuitable for waiting on async work. Previously, the Stop hook would fire-and-forget
the summarize request, then SessionEnd would immediately call deleteSession — aborting the SDK
agent mid-summary.

Now the Stop hook (120s timeout, no cap) owns the full lifecycle:
1. Queue summarize request
2. Poll new GET /api/sessions/status endpoint until queue drains
3. Call /api/sessions/complete after summary finishes

SessionEnd is now a true fire-and-forget fallback (process.exit(0) immediately).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-03 14:05:53 -07:00
Alex Newman 8265fc7aa1 Merge remote-tracking branch 'origin/thedotmack/npx-gemini-cli' into thedotmack/npx-gemini-cli 
Resolve merge conflicts in adapter index, gemini-cli adapter, and rebuilt CJS artifacts.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-03 13:47:49 -07:00
Alex Newman 76a880a3d6 feat: update install CLI, ESM compat, and Gemini CLI docs 
Fixes CursorHooksInstaller ESM compatibility, updates install command
with improved path resolution, and refreshes built plugin artifacts.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-03 12:38:45 -07:00
Alex Newman 67645041fa Merge main into thedotmack/file-read-timeline-inject 
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-01 16:11:41 -07:00
Alex Newman 80d1deedbe fix: address PR review feedback from CodeRabbit 
- Add sessionId to summarize.ts warning log for easier triage
- Add APPROVED OVERRIDE annotation to Windows spawn catch block

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-28 15:34:42 -07:00
Alex Newman 07ab7000a8 fix: patch 7 critical bugs affecting all non-dev-machine users and Windows 
1. Fix esbuild inlining build-machine __dirname as string literal — use
   CJS-compatible runtime banner with require("node:url").fileURLToPath
   across worker-service, mcp-server, and context-generator builds.

2. Fix isMainModule check missing .cjs extension and Windows backslash
   path normalization.

3. Wrap extractLastMessage in try-catch to prevent infinite Stop hook
   feedback loop on malformed transcripts (exit 0 instead of exit 2).

4. Replace heavy SessionEnd hook (Node→Bun→1.7MB CJS→HTTP) with
   lightweight inline node -e one-liner (~200ms vs >1s).

5. Add 7 Gemini/OpenRouter error patterns to unrecoverablePatterns
   circuit breaker to prevent 77K+ retry loops on expired API keys.

6. Preserve CLAUDE_CODE_OAUTH_TOKEN and CLAUDE_CODE_GIT_BASH_PATH in
   sanitizeEnv instead of stripping them with the CLAUDE_CODE_ prefix.

7. Use PowerShell -EncodedCommand for spawnDaemon to fix path quoting
   when Windows usernames contain spaces.

Closes #1515, #1495, #1475, #1465, #1500, #1513, #1512, #1450, #1460,
#1486, #1449, #1481, #1451, #1480, #1453, #1445

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-28 15:20:29 -07:00
Conductor 5621b67ccd Saving uncommitted changes before archiving 2026-03-26 19:35:27 -07:00
Alex Newman a656af2bff feat: improve Gemini CLI timeline display by stripping ANSI colors and providing markdown fallback 2026-03-25 23:51:56 -07:00
Alex Newman f2cc33b494 feat: add Gemini CLI, OpenCode, and Windsurf IDE integrations 
Gemini CLI: platform adapter mapping 6 of 11 hooks, settings.json
deep-merge installer, GEMINI.md context injection.

OpenCode: plugin with tool.execute.after interceptor, bus events for
session lifecycle, claude_mem_search custom tool, AGENTS.md context.

Windsurf: platform adapter for tool_info envelope format, hooks.json
installer for 5 post-action hooks, .windsurf/rules context injection.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-03-23 23:02:18 -07:00
Alex Newman c80763390b feat: file-read decision gate — block reads when observation history exists 
Add a PreToolUse gate that blocks file reads on first attempt when rich
observation history exists, presenting the timeline as feedback. Claude
then decides: use get_observations() (skip read, save tokens) or re-read
(allowed on second attempt).

- FileReadGate: in-memory session-scoped gate with 4h TTL
- POST /api/file-context/gate endpoint in worker
- stderrMessage plumbing in hook-command for exit code 2
- file-context handler uses gate to block/allow reads

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-19 12:11:02 -07:00
Alex Newman e07b13f7de fix: proper project isolation and relative path matching for file-context hook 
- Use getProjectContext(cwd).allProjects for project scoping (same as SessionStart)
- Convert absolute file_path to relative using cwd (observations store relative paths)
- API accepts comma-separated projects param with IN() SQL filter
- Remove basename matching — use full relative path to avoid cross-file collisions

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-18 15:38:53 -07:00
Alex Newman 1d48f63b99 fix: remove project filter from file-context hook — cwd != stored project name 
The handler was passing input.cwd (full absolute path) as the project
filter, but observations store short project names ('san-diego', not
'/Users/.../san-diego'). This caused zero results for every query.
Removing the filter entirely is better: cross-project observations
about the same file are useful for duplicate prevention.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-18 15:24:34 -07:00
Alex Newman fb9d917f8a feat: inject file observation timeline on PreToolUse Read hook 
When Claude reads a file, the PreToolUse hook queries for existing
observations about that file and injects the timeline into context
via additionalContext + permissionDecision: allow. This prevents
duplicate observations and saves tokens through active rediscovery.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-18 15:18:54 -07:00
Alex Newman 80a8c90a1a feat: add embedded Process Supervisor for unified process lifecycle (#1370) 
* feat: add embedded Process Supervisor for unified process lifecycle management

Consolidates scattered process management (ProcessManager, GracefulShutdown,
HealthMonitor, ProcessRegistry) into a unified src/supervisor/ module.

New: ProcessRegistry with JSON persistence, env sanitizer (strips CLAUDECODE_*
vars), graceful shutdown cascade (SIGTERM → 5s wait → SIGKILL with tree-kill
on Windows), PID file liveness validation, and singleton Supervisor API.

Fixes #1352 (worker inherits CLAUDECODE env causing nested sessions)
Fixes #1356 (zombie TCP socket after Windows reboot)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: add session-scoped process reaping to supervisor

Adds reapSession(sessionId) to ProcessRegistry for killing session-tagged
processes on session end. SessionManager.deleteSession() now triggers reaping.
Tightens orphan reaper interval from 60s to 30s.

Fixes #1351 (MCP server processes leak on session end)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: add Unix domain socket support for worker communication

Introduces socket-manager.ts for UDS-based worker communication, eliminating
port 37777 collisions between concurrent sessions. Worker listens on
~/.claude-mem/sockets/worker.sock by default with TCP fallback.

All hook handlers, MCP server, health checks, and admin commands updated to
use socket-aware workerHttpRequest(). Backwards compatible — settings can
force TCP mode via CLAUDE_MEM_WORKER_TRANSPORT=tcp.

Fixes #1346 (port 37777 collision across concurrent sessions)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: remove in-process worker fallback from hook command

Removes the fallback path where hook scripts started WorkerService in-process,
making the worker a grandchild of Claude Code (killed by sandbox). Hooks now
always delegate to ensureWorkerStarted() which spawns a fully detached daemon.

Fixes #1249 (grandchild process killed by sandbox)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: add health checker and /api/admin/doctor endpoint

Adds 30-second periodic health sweep that prunes dead processes from the
supervisor registry and cleans stale socket files. Adds /api/admin/doctor
endpoint exposing supervisor state, process liveness, and environment health.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* test: add comprehensive supervisor test suite

64 tests covering all supervisor modules: process registry (18 tests),
env sanitizer (8), shutdown cascade (10), socket manager (15), health
checker (5), and supervisor API (6). Includes persistence, isolation,
edge cases, and cross-module integration scenarios.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: revert Unix domain socket transport, restore TCP on port 37777

The socket-manager introduced UDS as default transport, but this broke
the HTTP server's TCP accessibility (viewer UI, curl, external monitoring).
Since there's only ever one worker process handling all sessions, the
port collision rationale for UDS doesn't apply. Reverts to TCP-only,
removing ~900 lines of unnecessary complexity.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore: remove dead code found in pre-landing review

Remove unused `acceptingSpawns` field from Supervisor class (written but
never read — assertCanSpawn uses stopPromise instead) and unused
`buildWorkerUrl` import from context handler.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* updated gitignore

* fix: address PR review feedback - downgrade HTTP logging, clean up gitignore, harden supervisor

- Downgrade request/response HTTP logging from info to debug to reduce noise
- Remove unused getWorkerPort imports, use buildWorkerUrl helper
- Export ENV_PREFIXES/ENV_EXACT_MATCHES from env-sanitizer, reuse in Server.ts
- Fix isPidAlive(0) returning true (should be false)
- Add shutdownInitiated flag to prevent signal handler race condition
- Make validateWorkerPidFile testable with pidFilePath option
- Remove unused dataDir from ShutdownCascadeOptions
- Upgrade reapSession log from debug to warn
- Rename zombiePidFiles to deadProcessPids (returns actual PIDs)
- Clean up gitignore: remove duplicate datasets/, stale ~*/ and http*/ patterns
- Fix tests to use temp directories instead of relying on real PID file

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-03-16 14:49:23 -07:00
AlexWorland 10e980cd69 fix: remove unrecognized fields from Claude Code Stop hook output (#1291) 
* fix: remove unrecognized fields from Claude Code Stop hook output

Claude Code validates Stop hook JSON output against its hook contract
schema which only accepts {decision?, reason?, systemMessage?}. The
formatOutput() function was returning {continue, suppressOutput} which
are not part of the Claude Code hook API, causing "JSON validation
failed" errors on every session stop.

Return an empty object {} for the default case (no hookSpecificOutput),
preserving only systemMessage when present. This is valid for all hook
event types and eliminates the schema validation error.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* test: add unhappy-path tests for formatOutput per PR review

Add edge case coverage for malformed input (undefined/null), falsy
systemMessage values, non-contract field stripping, and contract key
allowlist. Also add defensive null guard to formatOutput matching
normalizeInput pattern.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Alex Worland <alexworland@users.noreply.github.com>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
 2026-03-12 19:59:45 -07:00
alan e0fec4bad7 feat: add terminal output control for SessionStart context (#1143) 
* feat: add terminal output control for SessionStart context

Add CLAUDE_MEM_CONTEXT_SHOW_TERMINAL_OUTPUT setting to control whether
context is displayed in the terminal at SessionStart.

When set to "false", the terminal remains clean at startup while
context is still injected into Claude's system prompt. This allows
users who find the context output verbose to disable it without
losing the automatic context injection.

Defaults to "true" for backward compatibility.

Changes:
- Add CLAUDE_MEM_CONTEXT_SHOW_TERMINAL_OUTPUT to SettingsDefaultsManager
- Check setting in context handler before setting systemMessage
- Update settings file format to include new option

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* fix: use USER_SETTINGS_PATH and skip color fetch when disabled

Address PR feedback from automated review:

1. Use shared USER_SETTINGS_PATH constant instead of hardcoded path
   - Respects custom CLAUDE_MEM_DATA_DIR override
   - Consistent with other handlers (session-init, observation)

2. Skip color fetch when terminal output disabled
   - Check setting before making HTTP requests
   - Saves network round-trip on every session start

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Alan Dong <adong@Alans-MacBook-Pro.local>
Co-authored-by: Claude Sonnet 4.5 <noreply@anthropic.com>
 2026-02-23 21:05:05 -05:00
Alex Newman c6f932988a Fix 30+ root-cause bugs across 10 triage phases (#1214) 
* MAESTRO: fix ChromaDB core issues — Python pinning, Windows paths, disable toggle, metadata sanitization, transport errors

- Add --python version pinning to uvx args in both local and remote mode (fixes #1196, #1206, #1208)
- Convert backslash paths to forward slashes for --data-dir on Windows (fixes #1199)
- Add CLAUDE_MEM_CHROMA_ENABLED setting for SQLite-only fallback mode (fixes #707)
- Sanitize metadata in addDocuments() to filter null/undefined/empty values (fixes #1183, #1188)
- Wrap callTool() in try/catch for transport errors with auto-reconnect (fixes #1162)

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix data integrity — content-hash deduplication, project name collision, empty project guard, stuck isProcessing

- Add SHA-256 content-hash deduplication to observations INSERT (store.ts, transactions.ts, SessionStore.ts)
- Add content_hash column via migration 22 with backfill and index
- Fix project name collision: getCurrentProjectName() now returns parent/basename
- Guard against empty project string with cwd-derived fallback
- Fix stuck isProcessing: hasAnyPendingWork() resets processing messages older than 5 minutes
- Add 12 new tests covering all four fixes

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix hook lifecycle — stderr suppression, output isolation, conversation pollution prevention

- Suppress process.stderr.write in hookCommand() to prevent Claude Code showing diagnostic
  output as error UI (#1181). Restores stderr in finally block for worker-continues case.
- Convert console.error() to logger.warn()/error() in hook-command.ts and handlers/index.ts
  so all diagnostics route to log file instead of stderr.
- Verified all 7 handlers return suppressOutput: true (prevents conversation pollution #598, #784).
- Verified session-complete is a recognized event type (fixes #984).
- Verified unknown event types return no-op handler with exit 0 (graceful degradation).
- Added 10 new tests in tests/hook-lifecycle.test.ts covering event dispatch, adapter defaults,
  stderr suppression, and standard response constants.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix worker lifecycle — restart loop coordination, stale transport retry, ENOENT shutdown race

- Add PID file mtime guard to prevent concurrent restart storms (#1145):
  isPidFileRecent() + touchPidFile() coordinate across sessions
- Add transparent retry in ChromaMcpManager.callTool() on transport
  error — reconnects and retries once instead of failing (#1131)
- Wrap getInstalledPluginVersion() with ENOENT/EBUSY handling (#1042)
- Verified ChromaMcpManager.stop() already called on all shutdown paths

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix Windows platform support — uvx.cmd spawn, PowerShell $_ elimination, windowsHide, FTS5 fallback

- Route uvx spawn through cmd.exe /c on Windows since MCP SDK lacks shell:true (#1190, #1192, #1199)
- Replace all PowerShell Where-Object {$_} pipelines with WQL -Filter server-side filtering (#1024, #1062)
- Add windowsHide: true to all exec/spawn calls missing it to prevent console popups (#1048)
- Add FTS5 runtime probe with graceful fallback when unavailable on Windows (#791)
- Guard FTS5 table creation in migrations, SessionSearch, and SessionStore with try/catch

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix skills/ distribution — build-time verification and regression tests (#1187)

Add post-build verification in build-hooks.js that fails if critical
distribution files (skills, hooks, plugin manifest) are missing. Add
10 regression tests covering skill file presence, YAML frontmatter,
hooks.json integrity, and package.json files field.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix MigrationRunner schema initialization (#979) — version conflict between parallel migration systems

Root cause: old DatabaseManager migrations 1-7 shared schema_versions table with
MigrationRunner's 4-22, causing version number collisions (5=drop tables vs add column,
6=FTS5 vs prompt tracking, 7=discovery_tokens vs remove UNIQUE).  initializeSchema()
was gated behind maxApplied===0, so core tables were never created when old versions
were present.

Fixes:
- initializeSchema() always creates core tables via CREATE TABLE IF NOT EXISTS
- Migrations 5-7 check actual DB state (columns/constraints) not just version tracking
- Crash-safe temp table rebuilds (DROP IF EXISTS _new before CREATE)
- Added missing migration 21 (ON UPDATE CASCADE) to MigrationRunner
- Added ON UPDATE CASCADE to FK definitions in initializeSchema()
- All changes applied to both runner.ts and SessionStore.ts

Tests: 13 new tests in migration-runner.test.ts covering fresh DB, idempotency,
version conflicts, crash recovery, FK constraints, and data integrity.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix 21 test failures — stale mocks, outdated assertions, missing OpenClaw guards

Server tests (12): Added missing workerPath and getAiStatus to ServerOptions
mocks after interface expansion. ChromaSync tests (3): Updated to verify
transport cleanup in ChromaMcpManager after architecture refactor. OpenClaw (2):
Added memory_ tool skipping and response truncation to prevent recursive loops
and oversized payloads. MarkdownFormatter (2): Updated assertions to match
current output. SettingsDefaultsManager (1): Used correct default key for
getBool test. Logger standards (1): Excluded CLI transcript command from
background service check.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix Codex CLI compatibility (#744) — session_id fallbacks, unknown platform tolerance, undefined guard

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix Cursor IDE integration (#838, #1049) — adapter field fallbacks, tolerant session-init validation

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix /api/logs OOM (#1203) — tail-read replaces full-file readFileSync

Replace readFileSync (loads entire file into memory) with readLastLines()
that reads only from the end of the file in expanding chunks (64KB → 10MB cap).
Prevents OOM on large log files while preserving the same API response shape.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix Settings CORS error (#1029) — explicit methods and allowedHeaders in CORS config

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: add session custom_title for agent attribution (#1213) — migration 23, endpoint + store support

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: prevent CLAUDE.md/AGENTS.md writes inside .git/ directories (#1165)

Add .git path guard to all 4 write sites to prevent ref corruption when
paths resolve inside .git internals.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix plugin disabled state not respected (#781) — early exit check in all hook entry points

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix UserPromptSubmit context re-injection on every turn (#1079) — contextInjected session flag

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* MAESTRO: fix stale AbortController queue stall (#1099) — lastGeneratorActivity tracking + 30s timeout

Three-layer fix:
1. Added lastGeneratorActivity timestamp to ActiveSession, updated by
   processAgentResponse (all agents), getMessageIterator (queue yields),
   and startGeneratorWithProvider (generator launch)
2. Added stale generator detection in ensureGeneratorRunning — if no
   activity for >30s, aborts stale controller, resets state, restarts
3. Added AbortSignal.timeout(30000) in deleteSession to prevent
   indefinite hang when awaiting a stuck generator promise

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-23 19:34:35 -05:00
Albert Hui 42adfe29c8 fix: gracefully handle missing input fields in hook handlers (#1098) 
The summarize (Stop) and observation (PostToolUse) handlers throw
blocking errors (exit code 2) when optional input fields like
transcriptPath, toolName, or cwd are missing. This causes visible
hook errors on every session stop and after some tool uses.

Replace throws with graceful returns matching the existing pattern
used for worker-unavailable checks.

Fixes #1097

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-16 00:25:55 -05:00
Alex Newman 676a3d175e fix: make context and colored timeline fetches truly parallel 
Address PR #1125 review feedback - both fetches now start simultaneously
via Promise.all instead of sequential-then-parallel.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-16 00:11:25 -05:00
Alex Newman 34358ab33d feat: add systemMessage support for SessionStart hook and tune defaults 
Add systemMessage field to HookResult so SessionStart can display a
colored timeline directly to the user in the CLI. The handler now
parallel-fetches both markdown (for Claude context) and ANSI-colored
(for user display) timelines, appending a viewer URL link.

Also update default settings to hide verbose token columns (read/work
tokens, savings amount) and disable full observation expansion, keeping
the cleaner index-only view by default.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-16 00:05:13 -05:00
Alex Newman cb0933a908 fix: resolve merge conflict in isWorkerUnavailableError 
Missing return statement and closing brace in the programming errors
check caused a build failure after merging main.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-10 23:47:46 -05:00
Rod Boev 22683f6910 fix: clarify TypeError order dependency in error classifier 
Address Greptile review: add comment noting that TypeError('fetch failed')
is already handled by transport patterns before the instanceof check.
 2026-02-10 17:50:47 -05:00
Rod Boev 7ffa1b06ee Clarify order dependency 
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
 2026-02-10 17:36:13 -05:00
Rod Boev 418e38ee46 fix: hook resilience and worker lifecycle improvements (#957, #923, #984, #987, #1042) 
Reduce timeouts to eliminate 10-30s startup delay when worker is dead
(common on WSL2 after hibernate). Add stale PID detection, graceful
error handling across all handlers, and error classification that
distinguishes worker unavailability from handler bugs.

- HEALTH_CHECK 30s→3s, new POST_SPAWN_WAIT (5s), PORT_IN_USE_WAIT (3s)
- isProcessAlive() with EPERM handling, cleanStalePidFile()
- getPluginVersion() try-catch for shutdown race (#1042)
- isWorkerUnavailableError: transport+5xx+429→exit 0, 4xx→exit 2
- No-op handler for unknown event types (#984)
- Wrap all handler fetch calls in try-catch for graceful degradation
- CLAUDE_MEM_HEALTH_TIMEOUT_MS env var override with validation
 2026-02-10 15:34:35 -05:00
Alex Newman 8dfcb5e612 chore: bump version to 9.1.0 
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-07 01:05:38 -05:00
Alex Newman ff503d08a7 MAESTRO: Merge PR #657 - Add generate/clean CLI commands for CLAUDE.md management 
Cherry-picked source changes from PR #657 (224 commits behind main).
Adds `claude-mem generate` and `claude-mem clean` CLI commands:
- New src/cli/claude-md-commands.ts with generateClaudeMd() and cleanClaudeMd()
- Worker service generate/clean case handlers with --dry-run support
- CLAUDE_MD logger component type
- Uses shared isDirectChild from path-utils.ts (DRY improvement over PR original)

Skipped from PR: 91 CLAUDE.md file deletions (stale), build artifacts,
.claude/plans/ dev artifact, smart-install.js shell alias auto-injection
(aggressive profile modification without consent).

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-06 05:52:54 -05:00
Alex Newman bf439043cf MAESTRO: Merge PRs #920 and #699 - Add project exclusion and folder CLAUDE.md exclusion settings 
Cherry-picked both PRs to main (both had merge conflicts with current main).

PR #920 (@Spunky84): CLAUDE_MEM_EXCLUDED_PROJECTS setting with glob patterns
to exclude entire projects from memory tracking (privacy/confidentiality).
Early-exit in session-init and observation handlers. 11 unit tests.

PR #699 (@leepokai): CLAUDE_MEM_FOLDER_MD_EXCLUDE setting with JSON array
of paths to exclude from CLAUDE.md file generation (fixes SwiftUI/Xcode
build conflicts and drizzle kit migration failures). Closes #620.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-06 05:23:01 -05:00
Alex Newman 5dffb1ebb0 MAESTRO: fix(hooks): add session-complete handler to enable orphan reaper cleanup 
Cherry-picked from PR #844 by @thusdigital. Sessions stayed in active
sessions map forever after summarize, causing the orphan reaper to think
all processes were still active. Adds session-complete as Stop phase 2
hook that calls POST /api/sessions/complete to remove sessions from the
active map, allowing the reaper to correctly identify and clean up
orphaned worker processes. Fixes #842.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-06 03:23:13 -05:00
Claude 830d7a2b23 fix: detect complete JSON instead of waiting for EOF 
Root cause: Claude Code doesn't close stdin after writing hook input,
so stdin.on('end') never fires.

Previous approach: Timeout-based workaround (wait 5s then parse).

New approach: JSON is self-delimiting. We attempt to parse after each
data chunk. Once we have valid JSON, we resolve immediately without
waiting for EOF. This is the proper fix - hooks now exit in <500ms
instead of waiting for any timeout.

Changes:
- Add tryParseJson() to detect complete JSON
- Parse after each stdin chunk, resolve immediately on success
- Add 50ms parse delay for multi-chunk delivery edge case
- Safety timeout (30s) only for truly malformed input
- Removes dependency on stdin.on('end') which never fires

Testing:
- Normal operation: 448ms (was 5000ms+ with timeout approach)
- Stdin stays open: Process exits immediately after JSON complete

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-06 03:06:03 -05:00
Claude 5cbe0a38ca fix: address code review feedback 
- Change from absolute timeout to inactivity timeout (reset on each data chunk)
  to avoid truncating large/slow payloads
- Fix race condition: add resolved=true before resolving in catch block
- Fix unreliable readable check: just access the property, don't check value
- Add cleanup() call in catch block for consistency

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-06 03:06:03 -05:00
Claude c477ded1b5 fix: handle stdin unavailability and timeout to prevent hook hangs 
Fixes #727 (PostToolUse hooks hanging at "1/2 done")
Addresses #646 (Bun stdin EINVAL crash)

Root causes:
1. Bun crashes with EINVAL when Claude Code doesn't provide valid stdin fd
2. stdin.on('end') never fires if Claude Code doesn't close stdin properly

Changes:
- Add isStdinAvailable() to safely check stdin before reading
- Wrap stdin access in try-catch to handle Bun's lazy fstat crash
- Add 5-second timeout to prevent indefinite hangs
- Gracefully return undefined instead of crashing on stdin errors
- Properly clean up event listeners to prevent memory leaks

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-06 03:06:03 -05:00
Alex Newman 576d407c00 MAESTRO: Fix image-only prompts skipping session init (PR #928 concept) 
Image-only prompts have empty text content, causing session-init handler
to skip session creation entirely. Use '[media prompt]' placeholder so
sessions still get created and tracked in memory.

Closes PR #928 (applied directly due to merge conflicts with outdated base).
Credit: @iammike for identifying the issue.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-05 23:47:12 -05:00
Rajiv Sinclair 9789a1969c fix: gracefully handle empty prompts in session-init hook 
When a user submits an empty or whitespace-only prompt to Claude Code,
the UserPromptSubmit hook would throw "sessionInitHandler requires prompt"
and block the operation.

This change returns early with `{ continue: true }` instead of throwing,
allowing the session to continue gracefully.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-05 22:23:52 -05:00
Rod Boev 1dd456a6ca Add fetch timeouts to Stop hook and health checks 
Replace bare fetch() calls with fetchWithTimeout() using Promise.race
instead of AbortSignal.timeout() which causes libuv assertion crashes
in Bun on Windows.

Applies the already-defined HEALTH_CHECK_TIMEOUT_MS (30s/45s) to
isWorkerHealthy() and getWorkerVersion(), and HOOK_TIMEOUTS.DEFAULT
to the summarize POST. Previously these fetches had no timeout at all,
causing the Stop hook to hang for the full hook timeout (120s) when
the worker was unreachable.

Fixes #963
 2026-02-05 18:24:19 -05:00
Tafari Higgs 67f9d631bd Fix hooks to fail gracefully instead of blocking user prompts 
Three issues fixed:

1. session-init handler: Worker 500 errors caused `throw`, which
   hook-command.ts caught and exited with code 2 (blocking error).
   This blocked the user's prompt entirely with:
   "Hook error: Error: Session initialization failed: 500"
   Fix: Log the failure and return SUCCESS so the prompt proceeds.

2. user-message handler: Referenced nonexistent constant
   HOOK_EXIT_CODES.USER_MESSAGE_ONLY (undefined). Also used
   console.error() for informational output, which Claude Code
   may flag as an error. Fix: Use process.stderr.write() and
   return HOOK_EXIT_CODES.SUCCESS explicitly.

3. Both handlers threw on HTTP errors from the worker, causing
   exit code 2 (blocking). Memory plugin failures should never
   prevent users from using Claude Code. All worker HTTP failures
   now log and return gracefully.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 2026-02-05 18:18:36 -05:00
Alex Newman 4df9f61347 refactor: implement in-process worker architecture for hooks (#722) 
* fix: stop generating empty CLAUDE.md files

- Return empty string instead of "No recent activity" when no observations exist
- Skip writing CLAUDE.md files when formatted content is empty
- Remove redundant "auto-generated by claude-mem" HTML comment
- Clean up 98 existing empty CLAUDE.md files across the codebase
- Update tests to expect empty string for empty input

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* build assets

* refactor: implement in-process worker architecture for hooks

Replaces spawn-based worker startup with in-process architecture:
- Hook processes now become the worker when port 37777 is free
- Eliminates Windows spawn issues (NO SPAWN rule)
- SessionStart chains: smart-install && stop && context

Key changes:
- worker-service.ts: hook case starts WorkerService in-process
- hook-command.ts: skipExit option prevents process.exit() when hosting worker
- hooks.json: single chained command replaces separate start/hook commands
- worker-utils.ts: ensureWorkerRunning() returns boolean, doesn't block
- handlers: graceful fallback when worker unavailable

All 761 tests pass. Manual verification confirms hook stays alive as worker.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* context

* a

* MAESTRO: Mark PR #722 test verification task complete

All 797 tests passed (3 skipped, 0 failed) after merge conflict resolution.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* MAESTRO: Mark PR #722 build verification task complete

* MAESTRO: Mark PR #722 code review task complete

Code review verified:
- worker-service.ts hook case starts WorkerService in-process
- hook-command.ts has skipExit option
- hooks.json uses single chained command
- worker-utils.ts ensureWorkerRunning() returns boolean

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* MAESTRO: Mark PR #722 conflict resolution push task complete

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
 2026-02-04 19:49:15 -05:00
Alex Newman 601596f5cb Fix: Windows Terminal tab accumulation and Windows 11 compatibility (#625) (#628) 
* docs: add folder index generator plan

RFC for auto-generating folder-level CLAUDE.md files with observation
timelines. Includes IDE symlink support and root CLAUDE.md integration.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: implement folder index generator (Phase 1)

Add automatic CLAUDE.md generation for folders containing observed files.
This enables IDE context providers to access relevant memory observations.

Core modules:
- FolderDiscovery: Extract folders from observation file paths
- FolderTimelineCompiler: Compile chronological timeline per folder
- ClaudeMdGenerator: Write CLAUDE.md with tag-based content replacement
- FolderIndexOrchestrator: Coordinate regeneration on observation save

Integration:
- Event-driven regeneration after observation save in ResponseProcessor
- HTTP endpoints for folder discovery, timeline, and manual generation
- Settings for enabling/configuring folder index behavior

The <claude-mem-context> tag wrapping ensures:
- Manual CLAUDE.md content is preserved
- Auto-generated content won't be recursively observed
- Clean separation between user and system content

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add updateFolderClaudeMd function to CursorHooksInstaller

Adds function to update CLAUDE.md files for folders touched by observations.
Uses existing /api/search/by-file endpoint, preserves content outside
<claude-mem-context> tags, and writes atomically via temp file + rename.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: hook updateFolderClaudeMd into ResponseProcessor

Calls updateFolderClaudeMd after observation save to update folder-level
CLAUDE.md files. Uses fire-and-forget pattern with error logging.
Extracts file paths from saved observations and workspace path from registry.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add timeline formatting for folder CLAUDE.md files

Implements formatTimelineForClaudeMd function that transforms API response
into compact markdown table format. Converts emojis to text labels,
handles ditto marks for timestamps, and groups under "Recent" header.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* refactor: remove old folder-index implementation

Deletes redundant folder-index services that were replaced by the simpler
updateFolderClaudeMd approach in CursorHooksInstaller.ts.

Removed:
- src/services/folder-index/ directory (5 files)
- FolderIndexRoutes.ts
- folder-index settings from SettingsDefaultsManager
- folder-index route registration from worker-service

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add worktree-aware project filtering for unified timelines

Detect git worktrees and show both parent repo and worktree observations
in the session start timeline. When running in a worktree, the context
now includes observations from both projects, interleaved chronologically.

- Add detectWorktree() utility to identify worktree directories
- Add getProjectContext() to return parent + worktree projects
- Update context hook to pass multi-project queries
- Add queryObservationsMulti() and querySummariesMulti() for IN clauses
- Maintain backward compatibility with single-project queries

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>

* fix: restructure logging to prove session correctness and reduce noise

Add critical logging at each stage of the session lifecycle to prove the session ID chain (contentSessionId → sessionDbId → memorySessionId) stays aligned. New logs include CREATED, ENQUEUED, CLAIMED, MEMORY_ID_CAPTURED, STORING, and STORED. Move intermediate migration and backfill progress logs to DEBUG level to reduce noise, keeping only essential initialization and completion logs at INFO level.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>

* refactor: extract folder CLAUDE.md utils to shared location

Moves folder CLAUDE.md utilities from CursorHooksInstaller to a new
shared utils file. Removes Cursor registry dependency - file paths
from observations are already absolute, no workspace lookup needed.

New file: src/utils/claude-md-utils.ts
- replaceTaggedContent() - preserves user content outside tags
- writeClaudeMdToFolder() - atomic writes with tag preservation
- formatTimelineForClaudeMd() - API response to compact markdown
- updateFolderClaudeMdFiles() - orchestrates folder updates

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: trigger folder CLAUDE.md updates when observations are saved

The folder CLAUDE.md update was previously only triggered in
syncAndBroadcastSummary, but summaries run with observationCount=0
(observations are saved separately). Moved the update logic to
syncAndBroadcastObservations where file paths are available.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* all the claudes

* test: add unit tests for claude-md-utils pure functions

Add 11 tests covering replaceTaggedContent and formatTimelineForClaudeMd:
- replaceTaggedContent: empty content, tag replacement, appending, partial tags
- formatTimelineForClaudeMd: empty input, parsing, ditto marks, session IDs

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* test: add integration tests for file operation functions

Add 9 tests for writeClaudeMdToFolder and updateFolderClaudeMdFiles:
- writeClaudeMdToFolder: folder creation, content preservation, nested dirs, atomic writes
- updateFolderClaudeMdFiles: empty skip, fetch/write, deduplication, error handling

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* test: add unit tests for timeline-formatting utilities

Add 14 tests for extractFirstFile and groupByDate functions:
- extractFirstFile: relative paths, fallback to files_read, null handling, invalid JSON
- groupByDate: empty arrays, date grouping, chronological sorting, item preservation

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore: rebuild plugin scripts with merged features

* docs: add project-specific CLAUDE.md with architecture and development notes

* fix: exclude project root from auto-generated CLAUDE.md updates

Skip folders containing .git directory when auto-updating subfolder
CLAUDE.md files. This ensures:

1. Root CLAUDE.md remains user-managed and untouched by the system
2. SessionStart context injection stays pristine throughout the session
3. Subfolder CLAUDE.md files continue to receive live context updates
4. Cleaner separation between user-authored root docs and auto-generated folder indexes

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: prevent crash from resuming stale SDK sessions on worker restart

When the worker restarts, it was incorrectly passing the `resume` parameter
to INIT prompts (lastPromptNumber=1) when a memorySessionId existed from a
previous SDK session. This caused "Claude Code process exited with code 1"
crashes because the SDK tried to resume into a session that no longer exists.

Root cause: The resume condition only checked `hasRealMemorySessionId` but
did not verify that this was a CONTINUATION prompt (lastPromptNumber > 1).

Fix: Add `session.lastPromptNumber > 1` check to the resume condition:
- Before: `...(hasRealMemorySessionId && { resume: session.memorySessionId })`
- After: `...(hasRealMemorySessionId && session.lastPromptNumber > 1 && { resume: ... })`

Also added:
- Enhanced debug logging that warns when skipping resume for INIT prompts
- Unit tests in tests/sdk-agent-resume.test.ts (9 test cases)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: properly handle Chroma MCP connection errors

Previously, ensureCollection() caught ALL errors from chroma_get_collection_info
and assumed they meant "collection doesn't exist", triggering unnecessary
collection creation attempts. Connection errors like "Not connected" or
"MCP error -32000: Connection closed" would cascade into failed creation attempts.

Similarly, queryChroma() would silently return empty results when the MCP call
failed, masking the underlying connection problem.

Changes:
- ensureCollection(): Detect connection errors and re-throw immediately instead
  of attempting collection creation
- queryChroma(): Wrap MCP call in try-catch and throw connection errors instead
  of returning empty results
- Both methods reset connection state (connected=false, client=null) on
  connection errors so subsequent operations can attempt to reconnect

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* pushed

* fix: scope regenerate-claude-md.ts to current working directory

Critical bug fix: The script was querying ALL observations from the database
across ALL projects ever recorded (1396+ folders), then attempting to write
CLAUDE.md files everywhere including other projects, non-existent paths, and
ignored directories.

Changes:
- Use git ls-files to discover folders (respects .gitignore automatically)
- Filter database query to current project only (by folder name)
- Use relative paths for database queries (matches storage format)
- Add --clean flag to remove auto-generated CLAUDE.md files
- Add fallback directory walker for non-git repos

Now correctly scopes to 26 folders with observations instead of 1396+.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* docs and adjustments

* fix: cleanup mode strips tags instead of deleting files blindly

The cleanup mode was incorrectly deleting entire files that contained
<claude-mem-context> tags. The correct behavior (per original design):

1. Strip the <claude-mem-context>...</claude-mem-context> section
2. If empty after stripping → delete the file
3. If has remaining content → save the stripped version

Now properly preserves user content in CLAUDE.md files while removing
only the auto-generated sections.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* deleted some files

* chore: regenerate folder CLAUDE.md files with fixed script

Regenerated 23 folder CLAUDE.md files using the corrected script that:
- Scopes to current working directory only
- Uses git ls-files to respect .gitignore
- Filters by project name

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Update CLAUDE.md files for January 5, 2026

- Regenerated and staged 23 CLAUDE.md files with a mix of new and modified content.
- Fixed cleanup mode to properly strip tags instead of deleting files blindly.
- Cleaned up empty CLAUDE.md files from various directories, including ~/.claude and ~/Scripts.
- Conducted dry-run cleanup that identified a significant reduction in auto-generated CLAUDE.md files.
- Removed the isAutoGeneratedClaudeMd function due to incorrect file deletion behavior.

* feat: use settings for observation limit in batch regeneration script

Replace hard-coded limit of 10 with configurable CLAUDE_MEM_CONTEXT_OBSERVATIONS
setting (default: 50). This allows users to control how many observations appear
in folder CLAUDE.md files.

Changes:
- Import SettingsDefaultsManager and load settings at script startup
- Use OBSERVATION_LIMIT constant derived from settings at both call sites
- Remove stale default parameter from findObservationsByFolder function

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: use settings for observation limit in event-driven updates

Replace hard-coded limit of 10 in updateFolderClaudeMdFiles with
configurable CLAUDE_MEM_CONTEXT_OBSERVATIONS setting (default: 50).

Changes:
- Import SettingsDefaultsManager and os module
- Load settings at function start (once, not in loop)
- Use limit from settings in API call

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: Implement configurable observation limits and enhance search functionality

- Added configurable observation limits to batch regeneration scripts.
- Enhanced SearchManager to handle folder queries and normalize parameters.
- Introduced methods to check for direct child files in observations and sessions.
- Updated SearchOptions interface to include isFolder flag for filtering.
- Improved code quality with comprehensive reviews and anti-pattern checks.
- Cleaned up auto-generated CLAUDE.md files across various directories.
- Documented recent changes and improvements in CLAUDE.md files.

* build asset

* Project Context from Claude-Mem auto-added (can be auto removed at any time)

* CLAUDE.md updates

* fix: resolve CLAUDE.md files to correct directory in worktree setups

When using git worktrees, CLAUDE.md files were being written relative to
the worker's process.cwd() instead of the actual project directory. This
fix threads the project's cwd from message processing through to the file
writing utilities, ensuring CLAUDE.md files are created in the correct
project directory regardless of where the worker was started.

Changes:
- Add projectRoot parameter to updateFolderClaudeMdFiles for path resolution
- Thread projectRoot through ResponseProcessor call chain
- Track lastCwd from messages in SDKAgent, GeminiAgent, OpenRouterAgent
- Add tests for relative/absolute path handling with projectRoot

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* more project context updates

* context updates

* planning context

* feat: add CLI infrastructure for unified hook architecture (Phase 1)

- Add src/cli/types.ts with NormalizedHookInput, HookResult, PlatformAdapter, EventHandler interfaces
- Add src/cli/stdin-reader.ts with readJsonFromStdin() extracted from save-hook.ts pattern

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add platform adapters for unified hook CLI (Phase 2)

- Add claude-code adapter mapping session_id, tool_name, etc.
- Add cursor adapter mapping conversation_id, workspace_roots, result_json
- Add raw adapter for testing/passthrough
- Add getPlatformAdapter() factory function

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add event handlers for unified hook CLI (Phase 3)

- Add context handler (GET /api/context/inject)
- Add session-init handler (POST /api/sessions/init)
- Add observation handler (POST /api/sessions/observations)
- Add summarize handler (POST /api/sessions/summarize)
- Add user-message handler (stderr output, exit code 3)
- Add file-edit handler for Cursor afterFileEdit events
- Add getEventHandler() factory function

All handlers copy exact HTTP calls from original hooks.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add hook command dispatcher (Phase 4)

- Add src/cli/hook-command.ts dispatching stdin to adapters and handlers
- Add 'hook' case to worker-service.ts CLI switch
- Usage: bun worker-service.cjs hook <platform> <event>

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: update hooks.json to use unified CLI (Phase 5)

- Change context-hook.js to: hook claude-code context
- Change new-hook.js to: hook claude-code session-init
- Change save-hook.js to: hook claude-code observation
- Change summary-hook.js to: hook claude-code summarize
- Change user-message-hook.js to: hook claude-code user-message

All hooks now route through unified CLI: bun worker-service.cjs hook <platform> <event>

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: update Cursor integration to use unified CLI (Phase 6)

- Update CursorHooksInstaller to generate unified CLI commands
- Use node instead of shell scripts for Cursor hooks
- Add platform field to NormalizedHookInput for handler decisions
- Skip SDK agent init for Cursor platform (not supported)
- Fix file-edit handler to use 'write_file' tool name

Cursor event mapping:
- beforeSubmitPrompt → session-init, context
- afterMCPExecution/afterShellExecution → observation
- afterFileEdit → file-edit
- stop → summarize

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: remove old hook files, complete unified CLI migration (Phase 7)

Deleted files:
- src/hooks/context-hook.ts, new-hook.ts, save-hook.ts, summary-hook.ts, user-message-hook.ts
- cursor-hooks/*.sh and *.ps1 shell scripts
- plugin/scripts/*-hook.js built files

Modified:
- scripts/build-hooks.js: removed hook build loop

Build now produces only: worker-service.cjs, mcp-server.cjs, context-generator.cjs
All hooks route through: bun worker-service.cjs hook <platform> <event>

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: handle undefined stdin in platform adapters for SessionStart hooks

SessionStart hooks don't receive stdin data from Claude Code, causing the
adapters to crash when trying to access properties on undefined. Added
null coalescing to handle empty input gracefully.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* context update

* fix: replace deprecated WMIC with PowerShell for Windows 11 compatibility

Fixes #625

Changes:
- Replace WMIC process queries with PowerShell Get-Process and Get-CimInstance
- WMIC is deprecated in Windows 11 and causes terminal tab accumulation
- PowerShell provides simpler output format (just PIDs, not "ProcessId=1234")
- Update tests to match new PowerShell output parsing logic

Benefits:
- Windows 11 compatibility (WMIC removal planned)
- Fixes terminal window accumulation issue on Windows
- Cleaner, more maintainable parsing logic
- Same security validation (PID > 0, integer checks)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* fix: graceful exit strategy to prevent Windows Terminal tab accumulation (#625)

Problem:
Windows Terminal keeps tabs open when processes exit with code 1, leading
to tab accumulation during worker lifecycle operations (start, stop, restart,
version mismatches, port conflicts). This created a poor user experience with
dozens of orphaned terminal tabs.

Solution:
Implemented graceful exit strategy using exit code 0 for all expected failure
scenarios. The wrapper and plugin handle restart logic, so child processes
don't need to signal failure with non-zero exit codes.

Key Changes:
- worker-service.ts: Changed all process.exit(1) to process.exit(0) in:
  - Port conflict scenarios
  - Version mismatch recovery
  - Daemon spawn failures
  - Health check timeouts
  - Restart failures
  - Worker startup errors
- mcp-server.ts: Changed fatal error exit from 1 to 0
- ProcessManager.ts: Changed signal handler error exit from 1 to 0
- hook-command.ts: Changed hook error exit code from 1 to 2 (BLOCKING_ERROR)
  to ensure users see error messages (per Claude Code docs, exit 1 only shows
  in verbose mode)

All exits include explanatory comments documenting the graceful exit strategy.

Fixes #625

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* docs: update CLAUDE.md activity logs

Auto-generated context updates from work on issue #625:
- Windows 11 WMIC migration
- PowerShell process enumeration
- Graceful exit strategy implementation
- PR creation for Windows Terminal tab fix

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* docs: update activity logs in CLAUDE.md files across multiple directories

* chore: update CLAUDE.md files with recent activity and documentation improvements

- Adjusted dates and entries in CLAUDE.md for various components including reports and services.
- Added detailed activity logs for worker services, CLI commands, and server interactions.
- Documented exit code strategy in CLAUDE.md to clarify graceful exit philosophy.
- Extracted PowerShell timeout constant and updated related documentation and tests.
- Enhanced log level audit strategy and clarified logging patterns across services.

* polish: extract PowerShell timeout constant and document exit code strategy

- Extract magic number 60000ms to HOOK_TIMEOUTS.POWERSHELL_COMMAND (10000ms)
- Reduce PowerShell timeout from 60s to 10s per review feedback
- Document exit code strategy in CLAUDE.md
- Add test coverage for new constant

Addresses review feedback from PR #628

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* build assets

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
 2026-01-09 23:13:31 -05:00
Alex Newman a3d6bfc7dd feat: Update CLAUDE.md files with recent test activities and improvements 
- Added detailed entries for test activities across various modules including `export-types.test.ts`, `server.test.ts`, `smart-install.test.ts`, and others.
- Documented significant changes in test coverage, cleanup efforts, and regression tests.
- Enhanced the `plans` documentation with recent implementation strategies and PR follow-ups.
- Introduced a comprehensive report on Windows platform challenges and solutions, detailing issues like zombie ports, console popups, and process management.
- Established a new `ProcessManager` architecture to address Windows-specific issues and improve reliability.
- Updated integration tests to reflect recent changes and ensure comprehensive coverage.
 2026-01-07 16:53:02 -05:00
Alex Newman e1ab73decc feat: Live Context System with Distributed CLAUDE.md Generation (#556) 
* docs: add folder index generator plan

RFC for auto-generating folder-level CLAUDE.md files with observation
timelines. Includes IDE symlink support and root CLAUDE.md integration.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: implement folder index generator (Phase 1)

Add automatic CLAUDE.md generation for folders containing observed files.
This enables IDE context providers to access relevant memory observations.

Core modules:
- FolderDiscovery: Extract folders from observation file paths
- FolderTimelineCompiler: Compile chronological timeline per folder
- ClaudeMdGenerator: Write CLAUDE.md with tag-based content replacement
- FolderIndexOrchestrator: Coordinate regeneration on observation save

Integration:
- Event-driven regeneration after observation save in ResponseProcessor
- HTTP endpoints for folder discovery, timeline, and manual generation
- Settings for enabling/configuring folder index behavior

The <claude-mem-context> tag wrapping ensures:
- Manual CLAUDE.md content is preserved
- Auto-generated content won't be recursively observed
- Clean separation between user and system content

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add updateFolderClaudeMd function to CursorHooksInstaller

Adds function to update CLAUDE.md files for folders touched by observations.
Uses existing /api/search/by-file endpoint, preserves content outside
<claude-mem-context> tags, and writes atomically via temp file + rename.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: hook updateFolderClaudeMd into ResponseProcessor

Calls updateFolderClaudeMd after observation save to update folder-level
CLAUDE.md files. Uses fire-and-forget pattern with error logging.
Extracts file paths from saved observations and workspace path from registry.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add timeline formatting for folder CLAUDE.md files

Implements formatTimelineForClaudeMd function that transforms API response
into compact markdown table format. Converts emojis to text labels,
handles ditto marks for timestamps, and groups under "Recent" header.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* refactor: remove old folder-index implementation

Deletes redundant folder-index services that were replaced by the simpler
updateFolderClaudeMd approach in CursorHooksInstaller.ts.

Removed:
- src/services/folder-index/ directory (5 files)
- FolderIndexRoutes.ts
- folder-index settings from SettingsDefaultsManager
- folder-index route registration from worker-service

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add worktree-aware project filtering for unified timelines

Detect git worktrees and show both parent repo and worktree observations
in the session start timeline. When running in a worktree, the context
now includes observations from both projects, interleaved chronologically.

- Add detectWorktree() utility to identify worktree directories
- Add getProjectContext() to return parent + worktree projects
- Update context hook to pass multi-project queries
- Add queryObservationsMulti() and querySummariesMulti() for IN clauses
- Maintain backward compatibility with single-project queries

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>

* fix: restructure logging to prove session correctness and reduce noise

Add critical logging at each stage of the session lifecycle to prove the session ID chain (contentSessionId → sessionDbId → memorySessionId) stays aligned. New logs include CREATED, ENQUEUED, CLAIMED, MEMORY_ID_CAPTURED, STORING, and STORED. Move intermediate migration and backfill progress logs to DEBUG level to reduce noise, keeping only essential initialization and completion logs at INFO level.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>

* refactor: extract folder CLAUDE.md utils to shared location

Moves folder CLAUDE.md utilities from CursorHooksInstaller to a new
shared utils file. Removes Cursor registry dependency - file paths
from observations are already absolute, no workspace lookup needed.

New file: src/utils/claude-md-utils.ts
- replaceTaggedContent() - preserves user content outside tags
- writeClaudeMdToFolder() - atomic writes with tag preservation
- formatTimelineForClaudeMd() - API response to compact markdown
- updateFolderClaudeMdFiles() - orchestrates folder updates

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: trigger folder CLAUDE.md updates when observations are saved

The folder CLAUDE.md update was previously only triggered in
syncAndBroadcastSummary, but summaries run with observationCount=0
(observations are saved separately). Moved the update logic to
syncAndBroadcastObservations where file paths are available.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* all the claudes

* test: add unit tests for claude-md-utils pure functions

Add 11 tests covering replaceTaggedContent and formatTimelineForClaudeMd:
- replaceTaggedContent: empty content, tag replacement, appending, partial tags
- formatTimelineForClaudeMd: empty input, parsing, ditto marks, session IDs

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* test: add integration tests for file operation functions

Add 9 tests for writeClaudeMdToFolder and updateFolderClaudeMdFiles:
- writeClaudeMdToFolder: folder creation, content preservation, nested dirs, atomic writes
- updateFolderClaudeMdFiles: empty skip, fetch/write, deduplication, error handling

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* test: add unit tests for timeline-formatting utilities

Add 14 tests for extractFirstFile and groupByDate functions:
- extractFirstFile: relative paths, fallback to files_read, null handling, invalid JSON
- groupByDate: empty arrays, date grouping, chronological sorting, item preservation

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore: rebuild plugin scripts with merged features

* docs: add project-specific CLAUDE.md with architecture and development notes

* fix: exclude project root from auto-generated CLAUDE.md updates

Skip folders containing .git directory when auto-updating subfolder
CLAUDE.md files. This ensures:

1. Root CLAUDE.md remains user-managed and untouched by the system
2. SessionStart context injection stays pristine throughout the session
3. Subfolder CLAUDE.md files continue to receive live context updates
4. Cleaner separation between user-authored root docs and auto-generated folder indexes

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: prevent crash from resuming stale SDK sessions on worker restart

When the worker restarts, it was incorrectly passing the `resume` parameter
to INIT prompts (lastPromptNumber=1) when a memorySessionId existed from a
previous SDK session. This caused "Claude Code process exited with code 1"
crashes because the SDK tried to resume into a session that no longer exists.

Root cause: The resume condition only checked `hasRealMemorySessionId` but
did not verify that this was a CONTINUATION prompt (lastPromptNumber > 1).

Fix: Add `session.lastPromptNumber > 1` check to the resume condition:
- Before: `...(hasRealMemorySessionId && { resume: session.memorySessionId })`
- After: `...(hasRealMemorySessionId && session.lastPromptNumber > 1 && { resume: ... })`

Also added:
- Enhanced debug logging that warns when skipping resume for INIT prompts
- Unit tests in tests/sdk-agent-resume.test.ts (9 test cases)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: properly handle Chroma MCP connection errors

Previously, ensureCollection() caught ALL errors from chroma_get_collection_info
and assumed they meant "collection doesn't exist", triggering unnecessary
collection creation attempts. Connection errors like "Not connected" or
"MCP error -32000: Connection closed" would cascade into failed creation attempts.

Similarly, queryChroma() would silently return empty results when the MCP call
failed, masking the underlying connection problem.

Changes:
- ensureCollection(): Detect connection errors and re-throw immediately instead
  of attempting collection creation
- queryChroma(): Wrap MCP call in try-catch and throw connection errors instead
  of returning empty results
- Both methods reset connection state (connected=false, client=null) on
  connection errors so subsequent operations can attempt to reconnect

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* pushed

* fix: scope regenerate-claude-md.ts to current working directory

Critical bug fix: The script was querying ALL observations from the database
across ALL projects ever recorded (1396+ folders), then attempting to write
CLAUDE.md files everywhere including other projects, non-existent paths, and
ignored directories.

Changes:
- Use git ls-files to discover folders (respects .gitignore automatically)
- Filter database query to current project only (by folder name)
- Use relative paths for database queries (matches storage format)
- Add --clean flag to remove auto-generated CLAUDE.md files
- Add fallback directory walker for non-git repos

Now correctly scopes to 26 folders with observations instead of 1396+.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* docs and adjustments

* fix: cleanup mode strips tags instead of deleting files blindly

The cleanup mode was incorrectly deleting entire files that contained
<claude-mem-context> tags. The correct behavior (per original design):

1. Strip the <claude-mem-context>...</claude-mem-context> section
2. If empty after stripping → delete the file
3. If has remaining content → save the stripped version

Now properly preserves user content in CLAUDE.md files while removing
only the auto-generated sections.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* deleted some files

* chore: regenerate folder CLAUDE.md files with fixed script

Regenerated 23 folder CLAUDE.md files using the corrected script that:
- Scopes to current working directory only
- Uses git ls-files to respect .gitignore
- Filters by project name

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Update CLAUDE.md files for January 5, 2026

- Regenerated and staged 23 CLAUDE.md files with a mix of new and modified content.
- Fixed cleanup mode to properly strip tags instead of deleting files blindly.
- Cleaned up empty CLAUDE.md files from various directories, including ~/.claude and ~/Scripts.
- Conducted dry-run cleanup that identified a significant reduction in auto-generated CLAUDE.md files.
- Removed the isAutoGeneratedClaudeMd function due to incorrect file deletion behavior.

* feat: use settings for observation limit in batch regeneration script

Replace hard-coded limit of 10 with configurable CLAUDE_MEM_CONTEXT_OBSERVATIONS
setting (default: 50). This allows users to control how many observations appear
in folder CLAUDE.md files.

Changes:
- Import SettingsDefaultsManager and load settings at script startup
- Use OBSERVATION_LIMIT constant derived from settings at both call sites
- Remove stale default parameter from findObservationsByFolder function

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: use settings for observation limit in event-driven updates

Replace hard-coded limit of 10 in updateFolderClaudeMdFiles with
configurable CLAUDE_MEM_CONTEXT_OBSERVATIONS setting (default: 50).

Changes:
- Import SettingsDefaultsManager and os module
- Load settings at function start (once, not in loop)
- Use limit from settings in API call

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: Implement configurable observation limits and enhance search functionality

- Added configurable observation limits to batch regeneration scripts.
- Enhanced SearchManager to handle folder queries and normalize parameters.
- Introduced methods to check for direct child files in observations and sessions.
- Updated SearchOptions interface to include isFolder flag for filtering.
- Improved code quality with comprehensive reviews and anti-pattern checks.
- Cleaned up auto-generated CLAUDE.md files across various directories.
- Documented recent changes and improvements in CLAUDE.md files.

* build asset

* Project Context from Claude-Mem auto-added (can be auto removed at any time)

* CLAUDE.md updates

* fix: resolve CLAUDE.md files to correct directory in worktree setups

When using git worktrees, CLAUDE.md files were being written relative to
the worker's process.cwd() instead of the actual project directory. This
fix threads the project's cwd from message processing through to the file
writing utilities, ensuring CLAUDE.md files are created in the correct
project directory regardless of where the worker was started.

Changes:
- Add projectRoot parameter to updateFolderClaudeMdFiles for path resolution
- Thread projectRoot through ResponseProcessor call chain
- Track lastCwd from messages in SDKAgent, GeminiAgent, OpenRouterAgent
- Add tests for relative/absolute path handling with projectRoot

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* more project context updates

* context updates

* fix: preserve actual dates in folder CLAUDE.md generation

Previously, formatTimelineForClaudeMd used today's date for all
observations because the API only returned time (e.g., "4:30 PM")
without date information. This caused all historical observations
to appear as if they happened today.

Changes:
- SearchManager.findByFile now groups results by date with headers
  (e.g., "### Jan 4, 2026") matching formatSearchResults behavior
- formatTimelineForClaudeMd now parses these date headers and uses
  the correct date when constructing epochs for date grouping

The timeline dates are critical for claude-mem context - LLMs need
accurate temporal context to understand when work happened.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* build: update worker assets with date parsing fix

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* claude-mem context: Fixed critical date parsing bug in PR #556

* fix: address PR #556 review items

- Use getWorkerHost() instead of hard-coded 127.0.0.1 in claude-md-utils
- Add error message and stack details to FOLDER_INDEX logging
- Add 5 new tests for worktree/projectRoot path resolution

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Refactor CLAUDE documentation across multiple components and tests

- Updated CLAUDE.md files in src/ui/viewer, src/ui/viewer/constants, src/ui/viewer/hooks, tests/server, tests/worker/agents, and plans to reflect recent changes and improvements.
- Removed outdated entries and consolidated recent activities for clarity.
- Enhanced documentation for hooks, settings, and pagination implementations.
- Streamlined test suite documentation for server and worker agents, indicating recent test audits and cleanup efforts.
- Adjusted plans to remove obsolete entries and focus on current implementation strategies.

* docs: comprehensive v9.0 documentation audit and updates

- Add usage/folder-context to docs.json navigation (was documented but hidden!)
- Update introduction.mdx with v9.0 release notes (Live Context, Worktree Support, Windows Fixes)
- Add CLAUDE_MEM_WORKER_HOST setting to configuration.mdx
- Add Folder Context Files section with link to detailed docs
- Document worktree support in folder-context.mdx
- Update terminology from "mem-search skill" to "MCP tools" throughout active docs
- Update Search Pipeline in architecture/overview.mdx
- Update usage/getting-started.mdx with MCP tools terminology
- Update usage/claude-desktop.mdx title and terminology
- Update hooks-architecture.mdx reference

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add recent activity log for worker CLI with detailed entries

* chore: update CLAUDE.md context files

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add brainstorming report for CLAUDE.md distribution architecture

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
 2026-01-05 22:41:42 -05:00
Alex Newman b0f47a840f chore: delete obsolete process management files 
Removed files now consolidated into worker-service.ts:
- src/services/process/ProcessManager.ts (PID management now in worker-service)
- src/cli/worker-cli.ts (CLI handling now in worker-service)
- src/services/worker-wrapper.ts (no longer needed with self-spawn pattern)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2025-12-26 19:03:05 -05:00
Alex Newman 266c746d50 feat: Fix observation timestamps, refactor session management, and enhance worker reliability (#437) 
* Refactor worker version checks and increase timeout settings

- Updated the default hook timeout from 5000ms to 120000ms for improved stability.
- Modified the worker version check to log a warning instead of restarting the worker on version mismatch.
- Removed legacy PM2 cleanup and worker start logic, simplifying the ensureWorkerRunning function.
- Enhanced polling mechanism for worker readiness with increased retries and reduced interval.

* feat: implement worker queue polling to ensure processing completion before proceeding

* refactor: change worker command from start to restart in hooks configuration

* refactor: remove session management complexity

- Simplify createSDKSession to pure INSERT OR IGNORE
- Remove auto-create logic from storeObservation/storeSummary
- Delete 11 unused session management methods
- Derive prompt_number from user_prompts count
- Keep sdk_sessions table schema unchanged for compatibility

* refactor: simplify session management by removing unused methods and auto-creation logic

* Refactor session prompt number retrieval in SessionRoutes

- Updated the method of obtaining the prompt number from the session.
- Replaced `store.getPromptCounter(sessionDbId)` with `store.getPromptNumberFromUserPrompts(claudeSessionId)` for better clarity and accuracy.
- Adjusted the logic for incrementing the prompt number to derive it from the user prompts count instead of directly incrementing a counter.

* refactor: replace getPromptCounter with getPromptNumberFromUserPrompts in SessionManager

Phase 7 of session management simplification. Updates SessionManager to derive
prompt numbers from user_prompts table count instead of using the deprecated
prompt_counter column.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* refactor: simplify SessionCompletionHandler to use direct SQL query

Phase 8: Remove call to findActiveSDKSession() and replace with direct
database query in SessionCompletionHandler.completeByClaudeId().

This removes dependency on the deleted findActiveSDKSession() method
and simplifies the code by using a straightforward SELECT query.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* refactor: remove markSessionCompleted call from SDKAgent

- Delete call to markSessionCompleted() in SDKAgent.ts
- Session status is no longer tracked or updated
- Part of phase 9: simplifying session management

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* refactor: remove markSessionComplete method (Phase 10)

- Deleted markSessionComplete() method from DatabaseManager
- Removed markSessionComplete call from SessionCompletionHandler
- Session completion status no longer tracked in database
- Part of session management simplification effort

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* refactor: replace deleted updateSDKSessionId calls in import script (Phase 11)

- Replace updateSDKSessionId() calls with direct SQL UPDATE statements
- Method was deleted in Phase 3 as part of session management simplification
- Import script now uses direct database access consistently

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* test: add validation for SQL updates in sdk_sessions table

* refactor: enhance worker-cli to support manual and automated runs

* Remove cleanup hook and associated session completion logic

- Deleted the cleanup-hook implementation from the hooks directory.
- Removed the session completion endpoint that was used by the cleanup hook.
- Updated the SessionCompletionHandler to eliminate the completeByClaudeId method and its dependencies.
- Adjusted the SessionRoutes to reflect the removal of the session completion route.

* fix: update worker-cli command to use bun for consistency

* feat: Implement timestamp fix for observations and enhance processing logic

- Added `earliestPendingTimestamp` to `ActiveSession` to track the original timestamp of the earliest pending message.
- Updated `SDKAgent` to capture and utilize the earliest pending timestamp during response processing.
- Modified `SessionManager` to track the earliest timestamp when yielding messages.
- Created scripts for fixing corrupted timestamps, validating fixes, and investigating timestamp issues.
- Verified that all corrupted observations have been repaired and logic for future processing is sound.
- Ensured orphan processing can be safely re-enabled after validation.

* feat: Enhance SessionStore to support custom database paths and add timestamp fields for observations and summaries

* Refactor pending queue processing and add management endpoints

- Disabled automatic recovery of orphaned queues on startup; users must now use the new /api/pending-queue/process endpoint.
- Updated processOrphanedQueues method to processPendingQueues with improved session handling and return detailed results.
- Added new API endpoints for managing pending queues: GET /api/pending-queue and POST /api/pending-queue/process.
- Introduced a new script (check-pending-queue.ts) for checking and processing pending observation queues interactively or automatically.
- Enhanced logging and error handling for better monitoring of session processing.

* updated agent sdk

* feat: Add manual recovery guide and queue management endpoints to documentation

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Co-authored-by: Claude Sonnet 4.5 <noreply@anthropic.com>
 2025-12-25 15:36:46 -05:00
Alex Newman f923c0cdd5 fix: complete better-sqlite3 to bun:sqlite migration 
Must Fix:
- Remove better-sqlite3 logic from smart-install.js (5 sections)
- Update all documentation to reference bun:sqlite (7 files)

Should Fix:
- Add defensive break statement in worker-cli.ts:38

Nice to Have:
- Add port validation in ProcessManager.start() (1024-65535)
- Add one-time marker for PM2 cleanup migration
- Verify clearPortCache() wiring (already correct)

Addresses PR #248 review feedback (comment #3648517713)

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Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
 2025-12-12 19:23:35 -05:00
Alex Newman 807d1d6100 feat: migrate scripts to Bun runtime 
- Updated shebangs in user-message-hook.js, worker-cli.js, and worker-service.cjs to use Bun instead of Node.
- Modified build-hooks.js to generate Bun-compatible shebangs in built scripts.
- Enhanced sync-marketplace.cjs to trigger a worker restart after syncing files via an HTTP request.
- Improved worker-cli.ts to exit with appropriate status codes after executing commands.
- Added build-worker-binary.js to create a Windows executable for the worker service using Bun's compile feature.
 2025-12-11 14:59:44 -05:00