f6fda8fff44bdab53a7df5c2f4e30aa1b465db2b
11 Commits
| Author | SHA1 | Message | Date | |
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 Alex Newman
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abd55977ca |
fix(mcp): MCP server crashes with Cannot find module 'bun:sqlite' under Node (#1645)
* fix(mcp): MCP server crashes with Cannot find module 'bun:sqlite' under Node
The MCP server bundle (mcp-server.cjs) ships with `#!/usr/bin/env node` so
it must run under Node, but commit
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Alex Newman
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c6f932988a |
Fix 30+ root-cause bugs across 10 triage phases (#1214)
* MAESTRO: fix ChromaDB core issues — Python pinning, Windows paths, disable toggle, metadata sanitization, transport errors - Add --python version pinning to uvx args in both local and remote mode (fixes #1196, #1206, #1208) - Convert backslash paths to forward slashes for --data-dir on Windows (fixes #1199) - Add CLAUDE_MEM_CHROMA_ENABLED setting for SQLite-only fallback mode (fixes #707) - Sanitize metadata in addDocuments() to filter null/undefined/empty values (fixes #1183, #1188) - Wrap callTool() in try/catch for transport errors with auto-reconnect (fixes #1162) Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix data integrity — content-hash deduplication, project name collision, empty project guard, stuck isProcessing - Add SHA-256 content-hash deduplication to observations INSERT (store.ts, transactions.ts, SessionStore.ts) - Add content_hash column via migration 22 with backfill and index - Fix project name collision: getCurrentProjectName() now returns parent/basename - Guard against empty project string with cwd-derived fallback - Fix stuck isProcessing: hasAnyPendingWork() resets processing messages older than 5 minutes - Add 12 new tests covering all four fixes Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix hook lifecycle — stderr suppression, output isolation, conversation pollution prevention - Suppress process.stderr.write in hookCommand() to prevent Claude Code showing diagnostic output as error UI (#1181). Restores stderr in finally block for worker-continues case. - Convert console.error() to logger.warn()/error() in hook-command.ts and handlers/index.ts so all diagnostics route to log file instead of stderr. - Verified all 7 handlers return suppressOutput: true (prevents conversation pollution #598, #784). - Verified session-complete is a recognized event type (fixes #984). - Verified unknown event types return no-op handler with exit 0 (graceful degradation). - Added 10 new tests in tests/hook-lifecycle.test.ts covering event dispatch, adapter defaults, stderr suppression, and standard response constants. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix worker lifecycle — restart loop coordination, stale transport retry, ENOENT shutdown race - Add PID file mtime guard to prevent concurrent restart storms (#1145): isPidFileRecent() + touchPidFile() coordinate across sessions - Add transparent retry in ChromaMcpManager.callTool() on transport error — reconnects and retries once instead of failing (#1131) - Wrap getInstalledPluginVersion() with ENOENT/EBUSY handling (#1042) - Verified ChromaMcpManager.stop() already called on all shutdown paths Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix Windows platform support — uvx.cmd spawn, PowerShell $_ elimination, windowsHide, FTS5 fallback - Route uvx spawn through cmd.exe /c on Windows since MCP SDK lacks shell:true (#1190, #1192, #1199) - Replace all PowerShell Where-Object {$_} pipelines with WQL -Filter server-side filtering (#1024, #1062) - Add windowsHide: true to all exec/spawn calls missing it to prevent console popups (#1048) - Add FTS5 runtime probe with graceful fallback when unavailable on Windows (#791) - Guard FTS5 table creation in migrations, SessionSearch, and SessionStore with try/catch Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix skills/ distribution — build-time verification and regression tests (#1187) Add post-build verification in build-hooks.js that fails if critical distribution files (skills, hooks, plugin manifest) are missing. Add 10 regression tests covering skill file presence, YAML frontmatter, hooks.json integrity, and package.json files field. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix MigrationRunner schema initialization (#979) — version conflict between parallel migration systems Root cause: old DatabaseManager migrations 1-7 shared schema_versions table with MigrationRunner's 4-22, causing version number collisions (5=drop tables vs add column, 6=FTS5 vs prompt tracking, 7=discovery_tokens vs remove UNIQUE). initializeSchema() was gated behind maxApplied===0, so core tables were never created when old versions were present. Fixes: - initializeSchema() always creates core tables via CREATE TABLE IF NOT EXISTS - Migrations 5-7 check actual DB state (columns/constraints) not just version tracking - Crash-safe temp table rebuilds (DROP IF EXISTS _new before CREATE) - Added missing migration 21 (ON UPDATE CASCADE) to MigrationRunner - Added ON UPDATE CASCADE to FK definitions in initializeSchema() - All changes applied to both runner.ts and SessionStore.ts Tests: 13 new tests in migration-runner.test.ts covering fresh DB, idempotency, version conflicts, crash recovery, FK constraints, and data integrity. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix 21 test failures — stale mocks, outdated assertions, missing OpenClaw guards Server tests (12): Added missing workerPath and getAiStatus to ServerOptions mocks after interface expansion. ChromaSync tests (3): Updated to verify transport cleanup in ChromaMcpManager after architecture refactor. OpenClaw (2): Added memory_ tool skipping and response truncation to prevent recursive loops and oversized payloads. MarkdownFormatter (2): Updated assertions to match current output. SettingsDefaultsManager (1): Used correct default key for getBool test. Logger standards (1): Excluded CLI transcript command from background service check. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix Codex CLI compatibility (#744) — session_id fallbacks, unknown platform tolerance, undefined guard Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix Cursor IDE integration (#838, #1049) — adapter field fallbacks, tolerant session-init validation Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix /api/logs OOM (#1203) — tail-read replaces full-file readFileSync Replace readFileSync (loads entire file into memory) with readLastLines() that reads only from the end of the file in expanding chunks (64KB → 10MB cap). Prevents OOM on large log files while preserving the same API response shape. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix Settings CORS error (#1029) — explicit methods and allowedHeaders in CORS config Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: add session custom_title for agent attribution (#1213) — migration 23, endpoint + store support Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: prevent CLAUDE.md/AGENTS.md writes inside .git/ directories (#1165) Add .git path guard to all 4 write sites to prevent ref corruption when paths resolve inside .git internals. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix plugin disabled state not respected (#781) — early exit check in all hook entry points Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix UserPromptSubmit context re-injection on every turn (#1079) — contextInjected session flag Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * MAESTRO: fix stale AbortController queue stall (#1099) — lastGeneratorActivity tracking + 30s timeout Three-layer fix: 1. Added lastGeneratorActivity timestamp to ActiveSession, updated by processAgentResponse (all agents), getMessageIterator (queue yields), and startGeneratorWithProvider (generator launch) 2. Added stale generator detection in ensureGeneratorRunning — if no activity for >30s, aborts stale controller, resets state, restarts 3. Added AbortSignal.timeout(30000) in deleteSession to prevent indefinite hang when awaiting a stuck generator promise Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com> |
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Alex Newman
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e788fd3676 |
fix: prevent duplicate worker daemons and zombie processes (#1178)
* fix: prevent duplicate worker daemons and zombie processes Three root causes of chroma-mcp timeouts: 1. HTTP shutdown (POST /api/admin/shutdown) closed resources but never called process.exit(). Zombie workers stayed alive, background tasks reconnected to chroma-mcp, spawning duplicate subprocesses that all contended for the same persistent data directory. 2. No guard against concurrent daemon startup. When hooks fired simultaneously, multiple daemons started before either wrote a PID file. The loser got EADDRINUSE but stayed alive because signal handlers registered in the constructor prevented exit. 3. Corrupt 147GB HNSW index file caused all chroma queries to timeout (MCP error -32001). Data fix: deleted corrupt collection, backfill rebuilds from SQLite. Code fixes: - Add PID-based guard in daemon startup: exit if PID file process alive - Add port-based guard in daemon startup: exit if port already bound (runs before WorkerService constructor registers keepalive handlers) - Add process.exit(0) after HTTP shutdown/restart completes Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: aggressive startup cleanup and one-time chroma wipe for upgrade Kill orphaned worker-service.cjs and chroma-mcp processes immediately at startup (no age gate) while keeping 30-min threshold for mcp-server. Wipe corrupt chroma data once on upgrade from pre-v10.3 versions — backfill rebuilds from SQLite automatically. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix: wrap shutdown handlers in try/finally to guarantee process.exit If onShutdown() or onRestart() threw, process.exit(0) was never reached, leaving the daemon alive as a zombie. Also removed redundant require('fs') calls in process-manager tests where ESM imports already existed. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com> |
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Mark L
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6d1f17adee |
fix: use Bun runtime for Windows daemon spawn (#1086)
Co-authored-by: root <root@localhost.localdomain> |
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Alex Newman
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98d87d7573 |
chore: bump version to 10.0.4
Reverts v10.0.3 chroma-mcp spawn storm fix (broken release). Restores codebase to v10.0.2 state. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
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Alex Newman
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3f01baebfe |
Merge remote-tracking branch 'origin/main' into fix/chroma-mcp-spawn-storm
# Conflicts: # src/services/worker-service.ts # tests/infrastructure/process-manager.test.ts |
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Rod Boev
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a3f9e7f638 |
fix: prevent chroma-mcp spawn storm with 5-layer defense (641 processes → max 2)
During SIGHUP testing with 6+ active sessions, ChromaSync.ensureConnection()
had no mutex — concurrent fire-and-forget syncObservation() calls each spawned
a chroma-mcp subprocess via StdioClientTransport, creating 641 orphans in ~5min.
Error-driven reconnection formed a positive feedback loop amplifying the storm.
Defense layers:
- Layer 0: Connection mutex via promise memoization (prevents concurrent spawns)
- Layer 1: Pre-spawn process count guard using execFileSync('ps') (kills excess)
- Layer 2: Hardened close() with try-finally + Unix pkill in GracefulShutdown
- Layer 3: Count-based orphan reaper in ProcessManager (not age-based)
- Layer 4: Circuit breaker stops retries after 3 consecutive failures for 60s
Closes #1063, closes #695
Relates to #1010, #707
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Rod Boev
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4e67393d27 |
fix: prevent daemon silent death from SIGHUP + unhandled errors
Root cause: registerSignalHandlers() handled SIGTERM/SIGINT but not SIGHUP. When the parent hook process exits, the kernel sends SIGHUP to the daemon, causing immediate termination (default signal action). Belt-and-suspenders fix: 1. SIGHUP handler: ignore in daemon mode, graceful shutdown otherwise 2. setsid: spawn daemon in new session on Linux (prevents SIGHUP delivery) 3. Global unhandledRejection/uncaughtException guards in daemon mode |
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Rod Boev
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418e38ee46 |
fix: hook resilience and worker lifecycle improvements (#957, #923, #984, #987, #1042)
Reduce timeouts to eliminate 10-30s startup delay when worker is dead (common on WSL2 after hibernate). Add stale PID detection, graceful error handling across all handlers, and error classification that distinguishes worker unavailability from handler bugs. - HEALTH_CHECK 30s→3s, new POST_SPAWN_WAIT (5s), PORT_IN_USE_WAIT (3s) - isProcessAlive() with EPERM handling, cleanStalePidFile() - getPluginVersion() try-catch for shutdown race (#1042) - isWorkerUnavailableError: transport+5xx+429→exit 0, 4xx→exit 2 - No-op handler for unknown event types (#984) - Wrap all handler fetch calls in try-catch for graceful degradation - CLAUDE_MEM_HEALTH_TIMEOUT_MS env var override with validation |
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Alex Newman
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d333c7dc08 |
MAESTRO: Expand startup orphan cleanup to target mcp-server and worker-service processes
The startup cleanupOrphanedProcesses() only targeted chroma-mcp, leaving orphaned mcp-server.cjs and worker-service.cjs processes undetected after daemon crashes. Expanded to target all claude-mem process types with 30-minute age filtering and current PID exclusion. Closes PR #687 (which had a spawnDaemon regression removing Windows WMIC support). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
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Alex Newman
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f21ea97c39 |
refactor: decompose monolith into modular architecture with comprehensive test suite (#538)
* fix: prevent memory_session_id from equaling content_session_id The bug: memory_session_id was initialized to contentSessionId as a "placeholder for FK purposes". This caused the SDK resume logic to inject memory agent messages into the USER's Claude Code transcript, corrupting their conversation history. Root cause: - SessionStore.createSDKSession initialized memory_session_id = contentSessionId - SDKAgent checked memorySessionId !== contentSessionId but this check only worked if the session was fetched fresh from DB The fix: - SessionStore: Initialize memory_session_id as NULL, not contentSessionId - SDKAgent: Simple truthy check !!session.memorySessionId (NULL = fresh start) - Database migration: Ran UPDATE to set memory_session_id = NULL for 1807 existing sessions that had the bug Also adds [ALIGNMENT] logging across the session lifecycle to help debug session continuity issues: - Hook entry: contentSessionId + promptNumber - DB lookup: contentSessionId → memorySessionId mapping proof - Resume decision: shows which memorySessionId will be used for resume - Capture: logs when memorySessionId is captured from first SDK response UI: Added "Alignment" quick filter button in LogsModal to show only alignment logs for debugging session continuity. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor: improve error handling in worker-service.ts - Fix GENERIC_CATCH anti-patterns by logging full error objects instead of just messages - Add [ANTI-PATTERN IGNORED] markers for legitimate cases (cleanup, hot paths) - Simplify error handling comments to be more concise - Improve httpShutdown() error discrimination for ECONNREFUSED - Reduce LARGE_TRY_BLOCK issues in initialization code Part of anti-pattern cleanup plan (132 total issues) * refactor: improve error logging in SearchManager.ts - Pass full error objects to logger instead of just error.message - Fixes PARTIAL_ERROR_LOGGING anti-patterns (10 instances) - Better debugging visibility when Chroma queries fail Part of anti-pattern cleanup (133 remaining) * refactor: improve error logging across SessionStore and mcp-server - SessionStore.ts: Fix error logging in column rename utility - mcp-server.ts: Log full error objects instead of just error.message - Improve error handling in Worker API calls and tool execution Part of anti-pattern cleanup (133 remaining) * Refactor hooks to streamline error handling and loading states - Simplified error handling in useContextPreview by removing try-catch and directly checking response status. - Refactored usePagination to eliminate try-catch, improving readability and maintaining error handling through response checks. - Cleaned up useSSE by removing unnecessary try-catch around JSON parsing, ensuring clarity in message handling. - Enhanced useSettings by streamlining the saving process, removing try-catch, and directly checking the result for success. * refactor: add error handling back to SearchManager Chroma calls - Wrap queryChroma calls in try-catch to prevent generator crashes - Log Chroma errors as warnings and fall back gracefully - Fixes generator failures when Chroma has issues - Part of anti-pattern cleanup recovery * feat: Add generator failure investigation report and observation duplication regression report - Created a comprehensive investigation report detailing the root cause of generator failures during anti-pattern cleanup, including the impact, investigation process, and implemented fixes. - Documented the critical regression causing observation duplication due to race conditions in the SDK agent, outlining symptoms, root cause analysis, and proposed fixes. * fix: address PR #528 review comments - atomic cleanup and detector improvements This commit addresses critical review feedback from PR #528: ## 1. Atomic Message Cleanup (Fix Race Condition) **Problem**: SessionRoutes.ts generator error handler had race condition - Queried messages then marked failed in loop - If crash during loop → partial marking → inconsistent state **Solution**: - Added `markSessionMessagesFailed()` to PendingMessageStore.ts - Single atomic UPDATE statement replaces loop - Follows existing pattern from `resetProcessingToPending()` **Files**: - src/services/sqlite/PendingMessageStore.ts (new method) - src/services/worker/http/routes/SessionRoutes.ts (use new method) ## 2. Anti-Pattern Detector Improvements **Problem**: Detector didn't recognize logger.failure() method - Lines 212 & 335 already included "failure" - Lines 112-113 (PARTIAL_ERROR_LOGGING detection) did not **Solution**: Updated regex patterns to include "failure" for consistency **Files**: - scripts/anti-pattern-test/detect-error-handling-antipatterns.ts ## 3. Documentation **PR Comment**: Added clarification on memory_session_id fix location - Points to SessionStore.ts:1155 - Explains why NULL initialization prevents message injection bug ## Review Response Addresses "Must Address Before Merge" items from review: ✅ Clarified memory_session_id bug fix location (via PR comment) ✅ Made generator error handler message cleanup atomic ❌ Deferred comprehensive test suite to follow-up PR (keeps PR focused) ## Testing - Build passes with no errors - Anti-pattern detector runs successfully - Atomic cleanup follows proven pattern from existing methods 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com> * fix: FOREIGN KEY constraint and missing failed_at_epoch column Two critical bugs fixed: 1. Missing failed_at_epoch column in pending_messages table - Added migration 20 to create the column - Fixes error when trying to mark messages as failed 2. FOREIGN KEY constraint failed when storing observations - All three agents (SDK, Gemini, OpenRouter) were passing session.contentSessionId instead of session.memorySessionId - storeObservationsAndMarkComplete expects memorySessionId - Added null check and clear error message However, observations still not saving - see investigation report. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com> * Refactor hook input parsing to improve error handling - Added a nested try-catch block in new-hook.ts, save-hook.ts, and summary-hook.ts to handle JSON parsing errors more gracefully. - Replaced direct error throwing with logging of the error details using logger.error. - Ensured that the process exits cleanly after handling input in all three hooks. * docs: add monolith refactor report with system breakdown Comprehensive analysis of codebase identifying: - 14 files over 500 lines requiring refactoring - 3 critical monoliths (SessionStore, SearchManager, worker-service) - 80% code duplication across agent files - 5-phase refactoring roadmap with domain-based architecture * docs: update monolith report post session-logging merge - SessionStore grew to 2,011 lines (49 methods) - highest priority - SearchManager reduced to 1,778 lines (improved) - Agent files reduced by ~45 lines combined - Added trend indicators and post-merge observations - Core refactoring proposal remains valid * refactor(sqlite): decompose SessionStore into modular architecture Extract the 2011-line SessionStore.ts monolith into focused, single-responsibility modules following grep-optimized progressive disclosure pattern: New module structure: - sessions/ - Session creation and retrieval (create.ts, get.ts, types.ts) - observations/ - Observation storage and queries (store.ts, get.ts, recent.ts, files.ts, types.ts) - summaries/ - Summary storage and queries (store.ts, get.ts, recent.ts, types.ts) - prompts/ - User prompt management (store.ts, get.ts, types.ts) - timeline/ - Cross-entity timeline queries (queries.ts) - import/ - Bulk import operations (bulk.ts) - migrations/ - Database migrations (runner.ts) New coordinator files: - Database.ts - ClaudeMemDatabase class with re-exports - transactions.ts - Atomic cross-entity transactions - Named re-export facades (Sessions.ts, Observations.ts, etc.) Key design decisions: - All functions take `db: Database` as first parameter (functional style) - Named re-exports instead of index.ts for grep-friendliness - SessionStore retained as backward-compatible wrapper - Target file size: 50-150 lines (60% compliance) 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor(agents): extract shared logic into modular architecture Consolidate duplicate code across SDKAgent, GeminiAgent, and OpenRouterAgent into focused utility modules. Total reduction: 500 lines (29%). New modules in src/services/worker/agents/: - ResponseProcessor.ts: Atomic DB transactions, Chroma sync, SSE broadcast - ObservationBroadcaster.ts: SSE event formatting and dispatch - SessionCleanupHelper.ts: Session state cleanup and stuck message reset - FallbackErrorHandler.ts: Provider error detection for fallback logic - types.ts: Shared interfaces (WorkerRef, SSE payloads, StorageResult) Bug fix: SDKAgent was incorrectly using obs.files instead of obs.files_read and hardcoding files_modified to empty array. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor(search): extract search strategies into modular architecture Decompose SearchManager into focused strategy pattern with: - SearchOrchestrator: Coordinates strategy selection and fallback - ChromaSearchStrategy: Vector semantic search via ChromaDB - SQLiteSearchStrategy: Filter-only queries for date/project/type - HybridSearchStrategy: Metadata filtering + semantic ranking - ResultFormatter: Markdown table formatting for results - TimelineBuilder: Chronological timeline construction - Filter modules: DateFilter, ProjectFilter, TypeFilter SearchManager now delegates to new infrastructure while maintaining full backward compatibility with existing public API. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor(context): decompose context-generator into modular architecture Extract 660-line monolith into focused components: - ContextBuilder: Main orchestrator (~160 lines) - ContextConfigLoader: Configuration loading - TokenCalculator: Token budget calculations - ObservationCompiler: Data retrieval and query building - MarkdownFormatter/ColorFormatter: Output formatting - Section renderers: Header, Timeline, Summary, Footer Maintains full backward compatibility - context-generator.ts now delegates to new ContextBuilder while preserving public API. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * refactor(worker): decompose worker-service into modular infrastructure Split 2000+ line monolith into focused modules: Infrastructure: - ProcessManager: PID files, signal handlers, child process cleanup - HealthMonitor: Port checks, health polling, version matching - GracefulShutdown: Coordinated cleanup on exit Server: - Server: Express app setup, core routes, route registration - Middleware: Re-exports from existing middleware - ErrorHandler: Centralized error handling with AppError class Integrations: - CursorHooksInstaller: Full Cursor IDE integration (registry, hooks, MCP) WorkerService now acts as thin coordinator wiring all components together. Maintains full backward compatibility with existing public API. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * Refactor session queue processing and database interactions - Implement claim-and-delete pattern in SessionQueueProcessor to simplify message handling and eliminate duplicate processing. - Update PendingMessageStore to support atomic claim-and-delete operations, removing the need for intermediate processing states. - Introduce storeObservations method in SessionStore for simplified observation and summary storage without message tracking. - Remove deprecated methods and clean up session state management in worker agents. - Adjust response processing to accommodate new storage patterns, ensuring atomic transactions for observations and summaries. - Remove unnecessary reset logic for stuck messages due to the new queue handling approach. * Add duplicate observation cleanup script Script to clean up duplicate observations created by the batching bug where observations were stored once per message ID instead of once per observation. Includes safety checks to always keep at least one copy. Usage: bun scripts/cleanup-duplicates.ts # Dry run bun scripts/cleanup-duplicates.ts --execute # Delete duplicates bun scripts/cleanup-duplicates.ts --aggressive # Ignore time window 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * test(sqlite): add comprehensive test suite for SQLite repositories Add 44 tests across 5 test files covering: - Sessions: CRUD operations and schema validation - Observations: creation, retrieval, filtering, and ordering - Prompts: persistence and association with observations - Summaries: generation tracking and session linkage - Transactions: context management and rollback behavior 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * test(worker): add comprehensive test suites for worker agent modules Add test coverage for response-processor, observation-broadcaster, session-cleanup-helper, and fallback-error-handler agents. Fix type import issues across search module (use `import type` for type-only imports) and update worker-service main module detection for ESM/CJS compatibility. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * test(search): add comprehensive test suites for search module Add test coverage for the refactored search architecture: - SearchOrchestrator: query coordination and caching - ResultFormatter: pagination, sorting, and field mapping - SQLiteSearchStrategy: database search operations - ChromaSearchStrategy: vector similarity search - HybridSearchStrategy: combined search with score fusion 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * test(context): add comprehensive test suites for context-generator modules Add test coverage for the modular context-generator architecture: - context-builder.test.ts: Tests for context building and result assembly - observation-compiler.test.ts: Tests for observation compilation with privacy tags - token-calculator.test.ts: Tests for token budget calculations - formatters/markdown-formatter.test.ts: Tests for markdown output formatting 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * test(infrastructure): add comprehensive test suites for worker infrastructure modules Add test coverage for graceful-shutdown, health-monitor, and process-manager modules extracted during the worker-service refactoring. All 32 tests pass. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * test(server): add comprehensive test suites for server modules Add test coverage for Express server infrastructure: - error-handler.test.ts: Tests error handling middleware including validation errors, database errors, and async error handling - server.test.ts: Tests server initialization, middleware configuration, and route mounting for all API endpoints 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * chore(package): add test scripts for modular test suites Add npm run scripts to simplify running tests: - test: run all tests - test:sqlite, test:agents, test:search, test:context, test:infra, test:server 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * build assets * feat(tests): add detailed failure analysis reports for session ID refactor, validation, and store tests - Created reports for session ID refactor test failures, highlighting 8 failures due to design mismatches. - Added session ID usage validation report detailing 10 failures caused by outdated assumptions in tests. - Documented session store test failures, focusing on foreign key constraint violations in 2 tests. - Compiled a comprehensive test suite report summarizing overall test results, including 28 failing tests across various categories. * fix(tests): align session ID tests with NULL-based initialization Update test expectations to match implementation where memory_session_id starts as NULL (not equal to contentSessionId) per architecture decision that memory_session_id must NEVER equal contentSessionId. Changes: - session_id_refactor.test.ts: expect NULL initial state, add updateMemorySessionId() calls - session_id_usage_validation.test.ts: update placeholder detection to check !== null - session_store.test.ts: add updateMemorySessionId() before storeObservation/storeSummary 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix(tests): update GeminiAgent tests with correct field names and mocks - Rename deprecated fields: claudeSessionId → contentSessionId, sdkSessionId → memorySessionId, pendingProcessingIds → pendingMessages - Add missing required ActiveSession fields - Add storeObservations mock (plural) for ResponseProcessor compatibility - Fix settings mock to use correct CLAUDE_MEM_GEMINI_RATE_LIMITING_ENABLED key - Add await to rejects.toThrow assertion 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * feat(tests): add logger imports and fix coverage test exclusions Phase 3 of test suite fixes: - Add logger imports to 34 high-priority source files (SQLite, worker, context) - Exclude CLI-facing files from console.log check (worker-service.ts, integrations/*Installer.ts) as they use console.log intentionally for interactive user output 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * docs: update SESSION_ID_ARCHITECTURE for NULL-based initialization Update documentation to reflect that memory_session_id starts as NULL, not as a placeholder equal to contentSessionId. This matches the implementation decision that memory_session_id must NEVER equal contentSessionId to prevent injecting memory messages into user transcripts. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * chore(deps): update esbuild and MCP SDK - esbuild: 0.25.12 → 0.27.2 (fixes minifyIdentifiers issue) - @modelcontextprotocol/sdk: 1.20.1 → 1.25.1 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * build assets and updates * chore: remove bun.lock and add to gitignore 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com> |