349 Commits

Author SHA1 Message Date
Alex Newman 2d146b78f2 chore: bump version to 12.4.7 2026-04-25 21:27:09 -07:00
Alex Newman 9dd8d6649e chore: bump version to 12.4.6 2026-04-25 21:24:52 -07:00
Alex Newman 21bd5c0d37 chore: bump version to 12.4.5
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 18:47:18 -07:00
Alex Newman af011f2ddb chore: bump version to 12.4.4 (#2137)
PATCH release for the /clear queue-drain fix (PR #2136):
removes the SessionEnd → session-complete shim across all five
integration surfaces so pending observations are no longer abandoned
when users type /clear, logout, or exit.

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 17:11:20 -07:00
Alex Newman 703c64c756 v12.4.3: one-time pollution cleanup migration + v12.4.1/v12.4.2 fixes (#2133)
* fix: 5 trivial bugs from v12.4.1 issue triage

- #2092: emit CJS-safe banner (no import.meta.url) in worker-service.cjs
- #2100: PreToolUse Read hook timeout 2000s → 60s
- #2131: add "shell": "bash" to every hook for Windows compat
- #2132: Antigravity dir typo .agent → .agents
- #2088: clear inherited MCP servers in worker SDK query() calls

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: stop context overflow loop + block task-notification leak

- SDKAgent: clear memorySessionId on "prompt is too long" so crash-recovery
  starts a fresh SDK session instead of resuming the same poisoned context
  forever (was producing 68+ failed pending_messages on a single stuck
  session in the wild)
- tag-stripping: new isInternalProtocolPayload() predicate; session-init
  hook + SessionRoutes both skip storage when entire prompt is one of
  Claude Code's autonomous protocol blocks (currently <task-notification>;
  conservative deny-list — does NOT touch <command-name>/<command-message>
  which wrap real user slash-commands)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: bump version to 12.4.2

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: update CHANGELOG.md for v12.4.2

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(cleanup): one-time v12.4.3 migration purges observer-sessions and stuck pending_messages

Adds CleanupV12_4_3 module that runs once per data dir on worker startup
(after migrations apply, before Chroma backfill). Drops accumulated pollution
that v12.4.0 (observer-sessions filter) and v12.4.2 (context-overflow guard +
task-notification leak block) prevent from recurring:

- DELETE FROM sdk_sessions WHERE project='observer-sessions' (cascades to
  user_prompts, observations, session_summaries via existing FK ON DELETE CASCADE)
- DELETE FROM pending_messages stuck in 'failed'/'processing' for any session
  with >=10 such rows (poisoned chains from the pre-v12.4.2 retry loop;
  threshold spares legitimate transient failures)
- Wipes ~/.claude-mem/chroma and chroma-sync-state.json so backfillAllProjects
  rebuilds the vector store from cleaned SQLite

Pre-flight checks free disk (1.2x DB size + 100MB) via fs.statfsSync; backs up
via VACUUM INTO with copyFileSync fallback; PRAGMA foreign_keys=ON on the
cleanup connection (off by default in bun:sqlite). Marker file
~/.claude-mem/.cleanup-v12.4.3-applied records backup path and counts. Opt-out
via CLAUDE_MEM_SKIP_CLEANUP_V12_4_3=1.

Verified locally: 311MB DB backed up to 277MB in 943ms; 11 observer sessions
+ 3 cascade rows + 141 stuck pending_messages purged; chroma rebuilt via
backfill. Total cleanup time 1.1s.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: address PR #2133 code review

- SessionRoutes: check isInternalProtocolPayload before stripping tags
  so internal protocol prompts skip the strip work entirely.
- tag-stripping: bound isInternalProtocolPayload input length to
  256KB to prevent ReDoS-class scans on malformed unclosed tags.
- SDKAgent: extract resetSessionForFreshStart helper; both
  context-overflow paths now share one nullification routine.
- worker-service: drop the per-startup "Checking for one-time
  v12.4.3 cleanup" info log — runs every boot even after marker
  exists; the function already logs at debug/warn when relevant.
- tests: add isInternalProtocolPayload edge cases (whitespace,
  attributes, partial tags, unrelated tags, oversize input).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: address Greptile P2 comments on PR #2133

CleanupV12_4_3.ts: derive backup directory and restore-hint path from
effectiveDataDir instead of the module-level BACKUPS_DIR/DB_PATH
constants. The dataDirectory override is meant for test isolation;
the prior version still wrote backups to the production directory.

SessionRoutes.ts: move isInternalProtocolPayload guard to the top of
handleSessionInitByClaudeId, before createSDKSession. The previous
position blocked the user_prompts insert but still created an empty
sdk_sessions row, asymmetric with the hook-layer guard in
session-init.ts.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(cleanup): retry on disk-skip; survive chroma wipe failure

CodeRabbit Major + Claude review:

- Disk pre-flight skip no longer writes the marker. A user temporarily
  low on disk would otherwise have the cleanup permanently disabled
  even after freeing space. Retry on next startup instead.

- Wrap wipeChromaArtifacts in try/catch and write the marker even on
  failure (with chromaWipeError captured). Without this, an rmSync
  permission failure on chroma/ left writeMarker unreached, so every
  subsequent boot re-ran the SQL purge AND created a fresh backup,
  consuming disk indefinitely.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(cleanup): close backup handle before copyFileSync fallback

Claude review:

- backupDb is now closed before falling into the copyFileSync fallback.
  On Windows an open SQLite handle holds a file lock that can prevent
  the fallback copy from reading the source. The previous version only
  closed after both branches completed.

- Add empty-body <task-notification></task-notification> case to the
  isInternalProtocolPayload tests for completeness.

Cascade-row count queries already match the actual FK columns
(content_session_id for user_prompts, memory_session_id for
observations / session_summaries) — no fix needed there.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(cleanup): accurate session count + add migration tests

Claude review v3:

session-init.ts: filter on rawPrompt before the [media prompt]
substitution. Functionally equivalent but explicit — the check no
longer depends on the substitution leaving real protocol payloads
untouched.

CleanupV12_4_3.ts: counts.observerSessions now comes from a pre-DELETE
COUNT(*), not from result.changes. bun:sqlite inflates result.changes
with FTS-trigger and cascade row counts (the user_prompts_fts triggers
inflate a 3-session purge to 19 changes). The previous code logged a
misleading total and wrote it to the marker.

tests/infrastructure/cleanup-v12_4_3.test.ts: happy-path coverage of
the migration against a real on-disk SQLite under a tmpdir. Verifies
observer-session purge with cascades, stuck pending_messages purge,
chroma artifact wipe, marker payload shape, idempotency on re-run, and
CLAUDE_MEM_SKIP_CLEANUP_V12_4_3 opt-out.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(protocol-filter): close two-block false positive; address review

CodeRabbit + Claude review v5:

tag-stripping.ts: PROTOCOL_ONLY_REGEX rewritten with a negative-lookahead
body so a prompt like "<task-notification>x</task-notification> hi
<task-notification>y</task-notification>" no longer matches as a single
outer block — the prior greedy [\s\S]* spanned the middle user text and
would have silently dropped a real prompt. Confirmed via probe.

tag-stripping.test.ts: drop the 50ms wall-clock assertion (CI flake);
add the two-block-with-text case as a regression test.

SessionRoutes.ts: filter on req.body.prompt directly, before the
[media prompt] substitution and 256KB truncation. Mirrors the
session-init.ts hook-layer ordering and ensures a protocol payload
that happens to be near the byte limit isn't truncated before the
filter runs.

cleanup-v12_4_3.test.ts: add stuckCount=9 below-threshold case
verifying pending_messages with <10 stuck rows are preserved.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(cleanup): include WAL/SHM in backup fallback; safer rollback

CodeRabbit Major + Claude review v6:

CleanupV12_4_3.ts: when VACUUM INTO fails and copyFileSync runs, also
copy any -wal/-shm sidecars. The DB is configured WAL mode, so recent
committed pages can live in those files; copying only the .db would
miss them. VACUUM INTO already captures everything in one file, so
the happy path is unaffected.

CleanupV12_4_3.ts: wrap ROLLBACK in try/catch so a no-op rollback
(SQLite already rolled back on a constraint failure) cannot shadow
the original purge error.

SDKAgent.ts: align both context-overflow log levels to error. Both
branches are fatal-recovery paths; the previous warn/error split was
inconsistent and made the throw branch easy to miss in logs.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: pre-count stuck pending_messages; document adjacent-block fall-through

Claude review v7:

CleanupV12_4_3.ts: runStuckPendingPurge now uses a SELECT COUNT(*)
before the DELETE, matching the pattern in runObserverSessionsPurge.
result.changes is reliable today (no FTS on pending_messages) but the
explicit count protects against future schema additions, and keeps
the two purges symmetric.

tag-stripping.test.ts: add test documenting that adjacent protocol
blocks (no user text between) deliberately fall through to storage.
The deny-list is per-block; concatenations are out of scope.

Skipped per project rules / Node API constraints:
- frsize fallback in disk check: Node/Bun StatFs doesn't expose frsize
- VACUUM-INTO comment: comment-only suggestion
- Overflow string constant extraction: low value

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 16:30:34 -07:00
Alex Newman 533c317737 chore: bump version to 12.4.1 2026-04-25 14:06:12 -07:00
Alex Newman d7c7eccd7f chore: bump version to 12.4.0 2026-04-25 13:40:46 -07:00
Alex Newman 94d592f212 perf: streamline worker startup and consolidate database connections (#2122)
* docs: pathfinder refactor corpus + Node 20 preflight

Adds the PATHFINDER-2026-04-22 principle-driven refactor plan (11 docs,
cross-checked PASS) plus the exploratory PATHFINDER-2026-04-21 corpus
that motivated it. Bumps engines.node to >=20.0.0 per the ingestion-path
plan preflight (recursive fs.watch). Adds the pathfinder skill.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* refactor: land PATHFINDER Plan 01 — data integrity

Schema, UNIQUE constraints, self-healing claim, Chroma upsert fallback.

- Phase 1: fresh schema.sql regenerated at post-refactor shape.
- Phase 2: migrations 23+24 — rebuild pending_messages without
  started_processing_at_epoch; UNIQUE(session_id, tool_use_id);
  UNIQUE(memory_session_id, content_hash) on observations; dedup
  duplicate rows before adding indexes.
- Phase 3: claimNextMessage rewritten to self-healing query using
  worker_pid NOT IN live_worker_pids; STALE_PROCESSING_THRESHOLD_MS
  and the 60-s stale-reset block deleted.
- Phase 4: DEDUP_WINDOW_MS and findDuplicateObservation deleted;
  observations.insert now uses ON CONFLICT DO NOTHING.
- Phase 5: failed-message purge block deleted from worker-service
  2-min interval; clearFailedOlderThan method deleted.
- Phase 6: repairMalformedSchema and its Python subprocess repair
  path deleted from Database.ts; SQLite errors now propagate.
- Phase 7: Chroma delete-then-add fallback gated behind
  CHROMA_SYNC_FALLBACK_ON_CONFLICT env flag as bridge until
  Chroma MCP ships native upsert.
- Phase 8: migration 19 no-op block absorbed into fresh schema.sql.

Verification greps all return 0 matches. bun test tests/sqlite/
passes 63/63. bun run build succeeds.

Plan: PATHFINDER-2026-04-22/01-data-integrity.md

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* refactor: land PATHFINDER Plan 02 — process lifecycle

OS process groups replace hand-rolled reapers. Worker runs until
killed; orphans are prevented by detached spawn + kill(-pgid).

- Phase 1: src/services/worker/ProcessRegistry.ts DELETED. The
  canonical registry at src/supervisor/process-registry.ts is the
  sole survivor; SDK spawn site consolidated into it via new
  createSdkSpawnFactory/spawnSdkProcess/getSdkProcessForSession/
  ensureSdkProcessExit/waitForSlot helpers.
- Phase 2: SDK children spawn with detached:true + stdio:
  ['ignore','pipe','pipe']; pgid recorded on ManagedProcessInfo.
- Phase 3: shutdown.ts signalProcess teardown uses
  process.kill(-pgid, signal) on Unix when pgid is recorded;
  Windows path unchanged (tree-kill/taskkill).
- Phase 4: all reaper intervals deleted — startOrphanReaper call,
  staleSessionReaperInterval setInterval (including the co-located
  WAL checkpoint — SQLite's built-in wal_autocheckpoint handles
  WAL growth without an app-level timer), killIdleDaemonChildren,
  killSystemOrphans, reapOrphanedProcesses, reapStaleSessions, and
  detectStaleGenerator. MAX_GENERATOR_IDLE_MS and MAX_SESSION_IDLE_MS
  constants deleted.
- Phase 5: abandonedTimer — already 0 matches; primary-path cleanup
  via generatorPromise.finally() already lives in worker-service
  startSessionProcessor and SessionRoutes ensureGeneratorRunning.
- Phase 6: evictIdlestSession and its evict callback deleted from
  SessionManager. Pool admission gates backpressure upstream.
- Phase 7: SDK-failure fallback — SessionManager has zero matches
  for fallbackAgent/Gemini/OpenRouter. Failures surface to hooks
  via exit code 2 through SessionRoutes error mapping.
- Phase 8: ensureWorkerRunning in worker-utils.ts rewritten to
  lazy-spawn — consults isWorkerPortAlive (which gates
  captureProcessStartToken for PID-reuse safety via commit
  99060bac), then spawns detached with unref(), then
  waitForWorkerPort({ attempts: 3, backoffMs: 250 }) hand-rolled
  exponential backoff 250→500→1000ms. No respawn npm dep.
- Phase 9: idle self-shutdown — zero matches for
  idleCheck/idleTimeout/IDLE_MAX_MS/idleShutdown. Worker exits
  only on external SIGTERM via supervisor signal handlers.

Three test files that exercised deleted code removed:
tests/worker/process-registry.test.ts,
tests/worker/session-lifecycle-guard.test.ts,
tests/services/worker/reap-stale-sessions.test.ts.
Pass count: 1451 → 1407 (-44), all attributable to deleted test
files. Zero new failures. 31 pre-existing failures remain
(schema-repair suite, logger-usage-standards, environmental
openclaw / plugin-distribution) — none introduced by Plan 02.

All 10 verification greps return 0. bun run build succeeds.

Plan: PATHFINDER-2026-04-22/02-process-lifecycle.md

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* refactor: land PATHFINDER Plan 04 (narrowed) — search fail-fast

Phases 3, 5, 6 only. Plan-doc inaccuracies for phases 1/2/4/7/8/9
deferred for plan reconciliation:
  - Phase 1/2: ObservationRow type doesn't exist; the four
    "formatters" operate on three incompatible types.
  - Phase 4: RECENCY_WINDOW_MS already imported from
    SEARCH_CONSTANTS at every call site.
  - Phase 7: getExistingChromaIds is NOT @deprecated and has an
    active caller in ChromaSync.backfillMissingSyncs.
  - Phase 8: estimateTokens already consolidated.
  - Phase 9: knowledge-corpus rewrite blocked on PG-3
    prompt-caching cost smoke test.

Phase 3 — Delete SearchManager.findByConcept/findByFile/findByType.
SearchRoutes handlers (handleSearchByConcept/File/Type) now call
searchManager.getOrchestrator().findByXxx() directly via new
getter accessors on SearchManager. ~250 LoC deleted.

Phase 5 — Fail-fast Chroma. Created
src/services/worker/search/errors.ts with ChromaUnavailableError
extends AppError(503, 'CHROMA_UNAVAILABLE'). Deleted
SearchOrchestrator.executeWithFallback's Chroma-failed
SQLite-fallback branch; runtime Chroma errors now throw 503.
"Path 3" (chromaSync was null at construction — explicit-
uninitialized config) preserved as legitimate empty-result state
per plan text. ChromaSearchStrategy.search no longer wraps in
try/catch — errors propagate.

Phase 6 — Delete HybridSearchStrategy three try/catch silent
fallback blocks (findByConcept, findByType, findByFile) at lines
~82-95, ~120-132, ~161-172. Removed `fellBack` field from
StrategySearchResult type and every return site
(SQLiteSearchStrategy, BaseSearchStrategy.emptyResult,
SearchOrchestrator).

Tests updated (Principle 7 — delete in same PR):
  - search-orchestrator.test.ts: "fall back to SQLite" rewritten
    as "throw ChromaUnavailableError (HTTP 503)".
  - chroma/hybrid/sqlite-search-strategy tests: rewritten to
    rejects.toThrow; removed fellBack assertions.

Verification: SearchManager.findBy → 0; fellBack → 0 in src/.
bun test tests/worker/search/ → 122 pass, 0 fail.
bun test (suite-wide) → 1407 pass, baseline maintained, 0 new
failures. bun run build succeeds.

Plan: PATHFINDER-2026-04-22/04-read-path.md (Phases 3, 5, 6)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* refactor: land PATHFINDER Plan 03 — ingestion path

Fail-fast parser, direct in-process ingest, recursive fs.watch,
DB-backed tool pairing. Worker-internal HTTP loopback eliminated.

- Phase 0: Created src/services/worker/http/shared.ts exporting
  ingestObservation/ingestPrompt/ingestSummary as direct
  in-process functions plus ingestEventBus (Node EventEmitter,
  reusing existing pattern — no third event bus introduced).
  setIngestContext wires the SessionManager dependency from
  worker-service constructor.
- Phase 1: src/sdk/parser.ts collapsed to one parseAgentXml
  returning { valid:true; kind: 'observation'|'summary'; data }
  | { valid:false; reason: string }. Inspects root element;
  <skip_summary reason="…"/> is a first-class summary case
  with skipped:true. NEVER returns undefined. NEVER coerces.
- Phase 2: ResponseProcessor calls parseAgentXml exactly once,
  branches on the discriminated union. On invalid → markFailed
  + logger.warn(reason). On observation → ingestObservation.
  On summary → ingestSummary then emit summaryStoredEvent
  { sessionId, messageId } (consumed by Plan 05's blocking
  /api/session/end).
- Phase 3: Deleted consecutiveSummaryFailures field
  (ResponseProcessor + SessionManager + worker-types) and
  MAX_CONSECUTIVE_SUMMARY_FAILURES constant. Circuit-breaker
  guards and "tripped" log lines removed.
- Phase 4: coerceObservationToSummary deleted from sdk/parser.ts.
- Phase 5: src/services/transcripts/watcher.ts rescan setInterval
  replaced with fs.watch(transcriptsRoot, { recursive: true,
  persistent: true }) — Node 20+ recursive mode.
- Phase 6: src/services/transcripts/processor.ts pendingTools
  Map deleted. tool_use rows insert with INSERT OR IGNORE on
  UNIQUE(session_id, tool_use_id) (added by Plan 01). New
  pairToolUsesByJoin query in PendingMessageStore for read-time
  pairing (UNIQUE INDEX provides idempotency; explicit consumer
  not yet wired).
- Phase 7: HTTP loopback at processor.ts:252 replaced with
  direct ingestObservation call. maybeParseJson silent-passthrough
  rewritten to fail-fast (throws on malformed JSON).
- Phase 8: src/utils/tag-stripping.ts countTags + stripTagsInternal
  collapsed into one alternation regex, single-pass over input.
- Phase 9: src/utils/transcript-parser.ts (dead TranscriptParser
  class) deleted. The active extractLastMessage at
  src/shared/transcript-parser.ts:41-144 is the sole survivor.

Tests updated (Principle 7 — same-PR delete):
  - tests/sdk/parser.test.ts + parse-summary.test.ts: rewritten
    to assert discriminated-union shape; coercion-specific
    scenarios collapse into { valid:false } assertions.
  - tests/worker/agents/response-processor.test.ts: circuit-breaker
    describe block skipped; non-XML/empty-response tests assert
    fail-fast markFailed behavior.

Verification: every grep returns 0. transcript-parser.ts deleted.
bun run build succeeds. bun test → 1399 pass / 28 fail / 7 skip
(net -8 pass = the 4 retired circuit-breaker tests + 4 collapsed
parser cases). Zero new failures vs baseline.

Deferred (out of Plan 03 scope, will land in Plan 06): SessionRoutes
HTTP route handlers still call sessionManager.queueObservation
inline rather than the new shared helpers — the helpers are ready,
the route swap is mechanical and belongs with the Zod refactor.

Plan: PATHFINDER-2026-04-22/03-ingestion-path.md

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* refactor: land PATHFINDER Plan 05 — hook surface

Worker-call plumbing collapsed to one helper. Polling replaced by
server-side blocking endpoint. Fail-loud counter surfaces persistent
worker outages via exit code 2.

- Phase 1: plugin/hooks/hooks.json — three 20-iteration `for i in
  1..20; do curl -sf .../health && break; sleep 0.1; done` shell
  retry wrappers deleted. Hook commands invoke their bun entry
  point directly.
- Phase 2: src/shared/worker-utils.ts — added
  executeWithWorkerFallback<T>(url, method, body) returning
  T | { continue: true; reason?: string }. All 8 hook handlers
  (observation, session-init, context, file-context, file-edit,
  summarize, session-complete, user-message) rewritten to use
  it instead of duplicating the ensureWorkerRunning →
  workerHttpRequest → fallback sequence.
- Phase 3: blocking POST /api/session/end in SessionRoutes.ts
  using validateBody + sessionEndSchema (z.object({sessionId})).
  One-shot ingestEventBus.on('summaryStoredEvent') listener,
  30 s timer, req.aborted handler — all share one cleanup so
  the listener cannot leak. summarize.ts polling loop, plus
  MAX_WAIT_FOR_SUMMARY_MS / POLL_INTERVAL_MS constants, deleted.
- Phase 4: src/shared/hook-settings.ts — loadFromFileOnce()
  memoizes SettingsDefaultsManager.loadFromFile per process.
  Per-handler settings reads collapsed.
- Phase 5: src/shared/should-track-project.ts — single exclusion
  check entry; isProjectExcluded no longer referenced from
  src/cli/handlers/.
- Phase 6: cwd validation pushed into adapter normalizeInput
  (all 6 adapters: claude-code, cursor, raw, gemini-cli,
  windsurf). New AdapterRejectedInput error in
  src/cli/adapters/errors.ts. Handler-level isValidCwd checks
  deleted from file-edit.ts and observation.ts. hook-command.ts
  catches AdapterRejectedInput → graceful fallback.
- Phase 7: session-init.ts conditional initAgent guard deleted;
  initAgent is idempotent. tests/hooks/context-reinjection-guard
  test (validated the deleted conditional) deleted in same PR
  per Principle 7.
- Phase 8: fail-loud counter at ~/.claude-mem/state/hook-failures
  .json. Atomic write via .tmp + rename. CLAUDE_MEM_HOOK_FAIL_LOUD
  _THRESHOLD setting (default 3). On consecutive worker-unreachable
  ≥ N: process.exit(2). On success: reset to 0. NOT a retry.
- Phase 9: ensureWorkerAliveOnce() module-scope memoization
  wrapping ensureWorkerRunning. executeWithWorkerFallback calls
  the memoized version.

Minimal validateBody middleware stub at
src/services/worker/http/middleware/validateBody.ts. Plan 06 will
expand with typed inference + error envelope conventions.

Verification: 4/4 grep targets pass. bun run build succeeds.
bun test → 1393 pass / 28 fail / 7 skip; -6 pass attributable
solely to deleted context-reinjection-guard test file. Zero new
failures vs baseline.

Plan: PATHFINDER-2026-04-22/05-hook-surface.md

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* refactor: land PATHFINDER Plan 06 — API surface

One Zod-based validator wrapping every POST/PUT. Rate limiter,
diagnostic endpoints, and shutdown wrappers deleted. Failure-
marking consolidated to one helper.

- Phase 1 (preflight): zod@^3 already installed.
- Phase 2: validateBody middleware confirmed at canonical shape
  in src/services/worker/http/middleware/validateBody.ts —
  safeParse → 400 { error: 'ValidationError', issues: [...] }
  on failure, replaces req.body with parsed value on success.
- Phase 3: Per-route Zod schemas declared at the top of each
  route file. 24 POST endpoints across SessionRoutes,
  CorpusRoutes, DataRoutes, MemoryRoutes, SearchRoutes,
  LogsRoutes, SettingsRoutes now wrap with validateBody().
  /api/session/end (Plan 05) confirmed using same middleware.
- Phase 4: validateRequired() deleted from BaseRouteHandler
  along with every call site. Inline coercion helpers
  (coerceStringArray, coercePositiveInteger) and inline
  if (!req.body...) guards deleted across all route files.
- Phase 5: Rate limiter middleware and its registration deleted
  from src/services/worker/http/middleware.ts. Worker binds
  127.0.0.1:37777 — no untrusted caller.
- Phase 6: viewer.html cached at module init in ViewerRoutes.ts
  via fs.readFileSync; served as Buffer with text/html content
  type. SKILL.md + per-operation .md files cached in
  Server.ts as Map<string, string>; loadInstructionContent
  helper deleted. NO fs.watch, NO TTL — process restart is the
  cache-invalidation event.
- Phase 7: Four diagnostic endpoints deleted from DataRoutes.ts
  — /api/pending-queue (GET), /api/pending-queue/process (POST),
  /api/pending-queue/failed (DELETE), /api/pending-queue/all
  (DELETE). Helper methods that ONLY served them
  (getQueueMessages, getStuckCount, getRecentlyProcessed,
  clearFailed, clearAll) deleted from PendingMessageStore.
  KEPT: /api/processing-status (observability), /health
  (used by ensureWorkerRunning).
- Phase 8: stopSupervisor wrapper deleted from supervisor/index.ts.
  GracefulShutdown now calls getSupervisor().stop() directly.
  Two functions retained with clear roles:
    - performGracefulShutdown — worker-side 6-step shutdown
    - runShutdownCascade — supervisor-side child teardown
      (process.kill(-pgid), Windows tree-kill, PID-file cleanup)
  Each has unique non-trivial logic and a single canonical caller.
- Phase 9: transitionMessagesTo(status, filter) is the sole
  failure-marking path on PendingMessageStore. Old methods
  markSessionMessagesFailed and markAllSessionMessagesAbandoned
  deleted along with all callers (worker-service,
  SessionCompletionHandler, tests/zombie-prevention).

Tests updated (Principle 7 same-PR delete): coercion test files
refactored to chain validateBody → handler. Zombie-prevention
tests rewritten to call transitionMessagesTo.

Verification: all 4 grep targets → 0. bun run build succeeds.
bun test → 1393 pass / 28 fail / 7 skip — exact match to
baseline. Zero new failures.

Plan: PATHFINDER-2026-04-22/06-api-surface.md

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* refactor: land PATHFINDER Plan 07 — dead code sweep

ts-prune-driven sweep across the tree after Plans 01-06 landed.
Deleted unused exports, orphan helpers, and one fully orphaned
file. Earlier-plan deletions verified.

Deleted:
- src/utils/bun-path.ts (entire file — getBunPath, getBunPathOrThrow,
  isBunAvailable: zero importers)
- bun-resolver.getBunVersionString: zero callers
- PendingMessageStore.retryMessage / resetProcessingToPending /
  abortMessage: superseded by transitionMessagesTo (Plan 06 Phase 9)
- EnvManager.MANAGED_CREDENTIAL_KEYS, EnvManager.setCredential:
  zero callers
- CodexCliInstaller.checkCodexCliStatus: zero callers; no status
  command exists in npx-cli
- Two "REMOVED: cleanupOrphanedSessions" stale-fence comments

Kept (with documented justification):
- Public API surface in dist/sdk/* (parseAgentXml, prompt
  builders, ParsedObservation, ParsedSummary, ParseResult,
  SUMMARY_MODE_MARKER) — exported via package.json sdk path.
- generateContext / loadContextConfig / token utilities — used
  via dynamic await import('../../../context-generator.js') in
  worker SearchRoutes.
- MCP_IDE_INSTALLERS, install/uninstall functions for codex/goose
  — used via dynamic await import in npx-cli/install.ts +
  uninstall.ts (ts-prune cannot trace dynamic imports).
- getExistingChromaIds — active caller in
  ChromaSync.backfillMissingSyncs (Plan 04 narrowed scope).
- processPendingQueues / getSessionsWithPendingMessages — active
  orphan-recovery caller in worker-service.ts plus
  zombie-prevention test coverage.
- StoreAndMarkCompleteResult legacy alias — return-type annotation
  in same file.
- All Database.ts barrel re-exports — used downstream.

Earlier-plan verification:
- Plan 03 Phase 9: VERIFIED — src/utils/transcript-parser.ts
  is gone; TranscriptParser has 0 references in src/.
- Plan 01 Phase 8: VERIFIED — migration 19 no-op absorbed.
- SessionStore.ts:52-70 consolidation NOT executed (deferred):
  the methods are not thin wrappers but ~900 LoC of bodies, and
  two methods are documented as intentional mirrors so the
  context-generator.cjs bundle stays schema-consistent without
  pulling MigrationRunner. Deserves its own plan, not a sweep.

Verification: TranscriptParser → 0; transcript-parser.ts → gone;
no commented-out code markers remain. bun run build succeeds.
bun test → 1393 pass / 28 fail / 7 skip — EXACT match to
baseline. Zero regressions.

Plan: PATHFINDER-2026-04-22/07-dead-code.md

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: remove residual ProcessRegistry comment reference

Plan 07 dead-code sweep missed one comment-level reference to the
deleted in-memory ProcessRegistry class in SessionManager.ts:347.
Rewritten to describe the supervisor.json scope without naming the
deleted class, completing the verification grep target.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: address Greptile review (P1 + 2× P2)

P1 — Plan 05 Phase 3 blocking endpoint was non-functional:
executeWithWorkerFallback used HEALTH_CHECK_TIMEOUT_MS (3 s) for
the POST /api/session/end call, but the server holds the
connection for SERVER_SIDE_SUMMARY_TIMEOUT_MS (30 s). Client
always raced to a "timed out" rejection that isWorkerUnavailable
classified as worker-unreachable, so the hook silently degraded
instead of waiting for summaryStoredEvent.
  - Added optional timeoutMs to executeWithWorkerFallback,
    forwarded to workerHttpRequest.
  - summarize.ts call site now passes 35_000 (5 s above server
    hold window).

P2 — ingestSummary({ kind: 'parsed' }) branch was dead code:
ResponseProcessor emitted summaryStoredEvent directly via the
event bus, bypassing the centralized helper that the comment
claimed was the single source.
  - ResponseProcessor now calls ingestSummary({ kind: 'parsed',
    sessionDbId, messageId, contentSessionId, parsed }) so the
    event-emission path is single-sourced.
  - ingestSummary's requireContext() resolution moved inside the
    'queue' branch (the only branch that needs sessionManager /
    dbManager). 'parsed' is a pure event-bus emission and
    doesn't need worker-internal context — fixes mocked
    ResponseProcessor unit tests that don't call
    setIngestContext.

P2 — isWorkerFallback could false-positive on legitimate API
responses whose schema includes { continue: true, ... }:
  - Added a Symbol.for('claude-mem/worker-fallback') brand to
    WorkerFallback. isWorkerFallback now checks the brand, not
    a duck-typed property name.

Verification: bun run build succeeds. bun test → 1393 pass /
28 fail / 7 skip — exact baseline match. Zero new failures.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: address Greptile iteration 2 (P1 + P2)

P1 — summaryStoredEvent fired regardless of whether the row was
persisted. ResponseProcessor's call to ingestSummary({ kind:
'parsed' }) ran for every parsed.kind === 'summary' even when
result.summaryId came back null (e.g. FK violation, null
memory_session_id at commit). The blocking /api/session/end
endpoint then returned { ok: true } and the Stop hook logged
'Summary stored' for a non-existent row.

  - Gate ingestSummary call on (parsed.data.skipped ||
    session.lastSummaryStored). Skipped summaries are an explicit
    no-op bypass and still confirm; real summaries only confirm
    when storage actually wrote a row.
  - Non-skipped + summaryId === null path logs a warn and lets
    the server-side timeout (504) surface to the hook instead of
    a false ok:true.

P2 — PendingMessageStore.enqueue() returns 0 when INSERT OR
IGNORE suppresses a duplicate (the UNIQUE(session_id, tool_use_id)
constraint added by Plan 01 Phase 1). The two callers
(SessionManager.queueObservation and queueSummarize) previously
logged 'ENQUEUED messageId=0' which read like a row was inserted.

  - Branch on messageId === 0 and emit a 'DUP_SUPPRESSED' debug
    log instead of the misleading ENQUEUED line. No behavior
    change — the duplicate is still correctly suppressed by the
    DB (Principle 3); only the log surface is corrected.
  - confirmProcessed is never called with the enqueue() return
    value (it operates on session.processingMessageIds[] from
    claimNextMessage), so no caller is broken; the visibility
    fix prevents future misuse.

Verification: bun run build succeeds. bun test → 1393 pass /
28 fail / 7 skip — exact baseline match. Zero new failures.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: address Greptile iteration 3 (P1 + 2× P2)

- P1 worker-service.ts: wire ensureGeneratorRunning into the ingest
  context after SessionRoutes is constructed. setIngestContext runs
  before routes exist, so transcript-watcher observations queued via
  ingestObservation() had no way to auto-start the SDK generator.
  Added attachIngestGeneratorStarter() to patch the callback in.
- P2 shared.ts: IngestEventBus now sets maxListeners to 0. Concurrent
  /api/session/end calls register one listener each and clean up on
  completion, so the default-10 warning fires spuriously under normal
  load.
- P2 SessionRoutes.ts: handleObservationsByClaudeId now delegates to
  ingestObservation() instead of duplicating skip-tool / meta /
  privacy / queue logic. Single helper, matching the Plan 03 goal.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: address Greptile iteration 4 (P1 tool-pair + P2 parse/path/doc)

- processor.handleToolResult: restore in-memory tool-use→tool-result
  pairing via session.pendingTools for schemas (e.g. Codex) whose
  tool_result events carry only tool_use_id + output. Without this,
  neither handler fired — all tool observations silently dropped.
- processor.maybeParseJson: return raw string on parse failure instead
  of throwing. Previously a single malformed JSON-shaped field caused
  handleLine's outer catch to discard the entire transcript line.
- watcher.deepestNonGlobAncestor: split on / and \\, emit empty string
  for purely-glob inputs so the caller skips the watch instead of
  anchoring fs.watch at the filesystem root. Windows-compatible.
- PendingMessageStore.enqueue: tighten docstring — callers today only
  log on the returned id; the SessionManager branches on id === 0.

* fix: forward tool_use_id through ingestObservation (Greptile iter 5)

P1 — Plan 01's UNIQUE(content_session_id, tool_use_id) dedup never
fired because the new shared ingest path dropped the toolUseId before
queueObservation. SQLite treats NULL values as distinct for UNIQUE,
so every replayed transcript line landed a duplicate row.

- shared.ingestObservation: forward payload.toolUseId to
  queueObservation so INSERT OR IGNORE can actually collapse.
- SessionRoutes.handleObservationsByClaudeId: destructure both
  tool_use_id (HTTP convention) and toolUseId (JS convention) from
  req.body and pass into ingestObservation.
- observationsByClaudeIdSchema: declare both keys explicitly so the
  validator doesn't rely on .passthrough() alone.

* fix: drop dead pairToolUsesByJoin, close session-end listener race

- PendingMessageStore: delete pairToolUsesByJoin. The method was never
  called and its self-join semantics are structurally incompatible
  with UNIQUE(content_session_id, tool_use_id): INSERT OR IGNORE
  collapses any second row with the same pair, so a self-join can
  only ever match a row to itself. In-memory pendingTools in
  processor.ts remains the pairing path for split-event schemas.

- IngestEventBus: retain a short-lived (60s) recentStored map keyed
  by sessionId. Populated on summaryStoredEvent emit, evicted on
  consume or TTL.

- handleSessionEnd: drain the recent-events buffer before attaching
  the listener. Closes the register-after-emit race where the summary
  can persist between the hook's summarize POST and its session/end
  POST — previously that window returned 504 after the 30s timeout.

* chore: merge origin/main into vivacious-teeth

Resolves conflicts with 15 commits on main (v12.3.9, security
observation types, Telegram notifier, PID-reuse worker start-guard).

Conflict resolution strategy:
- plugin/hooks/hooks.json, plugin/scripts/*.cjs, plugin/ui/viewer-bundle.js:
  kept ours — PATHFINDER Plan 05 deletes the for-i-in-1-to-20 curl retry
  loops and the built artifacts regenerate on build.
- src/cli/handlers/summarize.ts: kept ours — Plan 05 blocking
  POST /api/session/end supersedes main's fire-and-forget path.
- src/services/worker-service.ts: kept ours — Plan 05 ingest bus +
  summaryStoredEvent supersedes main's SessionCompletionHandler DI
  refactor + orphan-reaper fallback.
- src/services/worker/http/routes/SessionRoutes.ts: kept ours — same
  reason; generator .finally() Stop-hook self-clean is a guard for a
  path our blocking endpoint removes.
- src/services/worker/http/routes/CorpusRoutes.ts: merged — added
  security_alert / security_note to ALLOWED_CORPUS_TYPES (feature from
  #2084) while preserving our Zod validateBody schema.

Typecheck: 294 errors (vs 298 pre-merge). No new errors introduced; all
remaining are pre-existing (Component-enum gaps, DOM lib for viewer,
bun:sqlite types).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: address Greptile P2 findings

1) SessionRoutes.handleSessionEnd was the only route handler not wrapped
   in wrapHandler — synchronous exceptions would hang the client rather
   than surfacing as 500s. Wrap it like every other handler.

2) processor.handleToolResult only consumed the session.pendingTools
   entry when the tool_result arrived without a toolName. In the
   split-schema path where tool_result carries both toolName and toolId,
   the entry was never deleted and the map grew for the life of the
   session. Consume the entry whenever toolId is present.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: typing cleanup and viewer tsconfig split for PR feedback

- Add explicit return types for SessionStore query methods
- Exclude src/ui/viewer from root tsconfig, give it its own DOM-typed config
- Add bun to root tsconfig types, plus misc typing tweaks flagged by Greptile
- Rebuilt plugin/scripts/* artifacts

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: address Greptile P2 findings (iter 2)

- PendingMessageStore.transitionMessagesTo: require sessionDbId (drop
  the unscoped-drain branch that would nuke every pending/processing
  row across all sessions if a future caller omitted the filter).
- IngestEventBus.takeRecentSummaryStored: make idempotent — keep the
  cached event until TTL eviction so a retried Stop hook's second
  /api/session/end returns immediately instead of hanging 30 s.
- TranscriptWatcher fs.watch callback: skip full glob scan for paths
  already tailed (JSONL appends fire on every line; only unknown
  paths warrant a rescan).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: call finalizeSession in terminal session paths (Greptile iter 3)

terminateSession and runFallbackForTerminatedSession previously called
SessionCompletionHandler.finalizeSession before removeSessionImmediate;
the refactor dropped those calls, leaving sdk_sessions.status='active'
for every session killed by wall-clock limit, unrecoverable error, or
exhausted fallback chain. The deleted reapStaleSessions interval was
the only prior backstop.

Re-wires finalizeSession (idempotent: marks completed, drains pending,
broadcasts) into both paths; no reaper reintroduced.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: GC failed pending_messages rows at startup (Greptile iter 4)

Plan 07 deleted clearFailed/clearFailedOlderThan as "dead code", but
with the periodic sweep also removed, nothing reaps status='failed'
rows now — they accumulate indefinitely. Since claimNextMessage's
self-healing subquery scans this table, unbounded growth degrades
claim latency over time.

Re-introduces clearFailedOlderThan and calls it once at worker startup
(not a reaper — one-shot, idempotent). 7-day retention keeps enough
history for operator inspection while bounding the table.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: finalize sessions on normal exit; cleanup hoist; share handler (iter 5)

1. startSessionProcessor success branch now calls completionHandler.
   finalizeSession before removeSessionImmediate. Hooks-disabled installs
   (and any Stop hook that fails before POST /api/sessions/complete) no
   longer leave sdk_sessions rows as status='active' forever. Idempotent
   — a subsequent /api/sessions/complete is a no-op.

2. Hoist SessionRoutes.handleSessionEnd cleanup declaration above the
   closures that reference it (TDZ safety; safe at runtime today but
   fragile if timeout ever shrinks).

3. SessionRoutes now receives WorkerService's shared SessionCompletionHandler
   instead of constructing its own — prevents silent divergence if the
   handler ever becomes stateful.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: stop runaway crash-recovery loop on dead sessions

Two distinct bugs were combining to keep a dead session restarting forever:

Bug 1 (uncaught "The operation was aborted."):
  child_process.spawn emits 'error' asynchronously for ENOENT/EACCES/abort
  signal aborts. spawnSdkProcess() never attached an 'error' listener, so
  any async spawn failure became uncaughtException and escaped to the
  daemon-level handler. Attach an 'error' listener immediately after spawn,
  before the !child.pid early-return, so async spawn errors are logged
  (with errno code) and swallowed locally.

Bug 2 (sliding-window limiter never trips on slow restart cadence):
  RestartGuard tripped only when restartTimestamps.length exceeded
  MAX_WINDOWED_RESTARTS (10) within RESTART_WINDOW_MS (60s). With the 8s
  exponential-backoff cap, only ~7-8 restarts fit in the window, so a dead
  session that fail-restart-fail-restart on 8s cycles would loop forever
  (consecutiveRestarts climbing past 30+ in observed logs). Add a
  consecutiveFailures counter that increments on every restart and resets
  only on recordSuccess(). Trip when consecutive failures exceed
  MAX_CONSECUTIVE_FAILURES (5) — meaning 5 restarts with zero successful
  processing in between proves the session is dead. Both guards now run in
  parallel: tight loops still trip the windowed cap; slow loops trip the
  consecutive-failure cap.

Also: when the SessionRoutes path trips the guard, drain pending messages
to 'abandoned' so the session does not reappear in
getSessionsWithPendingMessages and trigger another auto-start cycle. The
worker-service.ts path already does this via terminateSession.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* perf: streamline worker startup and consolidate database connections

1. Database Pooling: Modified DatabaseManager, SessionStore, and SessionSearch to share a single bun:sqlite connection, eliminating redundant file descriptors.
2. Non-blocking Startup: Refactored WorktreeAdoption and Chroma backfill to run in the background (fire-and-forget), preventing them from stalling core initialization.
3. Diagnostic Routes: Added /api/chroma/status and bypassed the initialization guard for health/readiness endpoints to allow diagnostics during startup.
4. Robust Search: Implemented reliable SQLite FTS5 fallback in SearchManager for when Chroma (uvx) fails or is unavailable.
5. Code Cleanup: Removed redundant loopback MCP checks and mangled initialization logic from WorkerService.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: hard-exclude observer-sessions from hooks; bundle migration 29 (#2124)

* fix: hard-exclude observer-sessions from hooks; backfill bundle migrations

Stop hook + SessionEnd hook were storing the SDK observer's own
init/continuation/summary prompts in user_prompts, leaking into the
viewer (meta-observation regression). 25 such rows accumulated.

- shouldTrackProject: hard-reject OBSERVER_SESSIONS_DIR (and its subtree)
  before consulting user-configured exclusion globs.
- summarize.ts (Stop) and session-complete.ts (SessionEnd): early-return
  when shouldTrackProject(cwd) is false, so the observer's own hooks
  cannot bootstrap the worker or queue a summary against the meta-session.
- SessionRoutes: cap user-prompt body at 256 KiB at the session-init
  boundary so a runaway observer prompt cannot blow up storage.
- SessionStore: add migration 29 (UNIQUE(memory_session_id, content_hash)
  on observations) inline so bundled artifacts (worker-service.cjs,
  context-generator.cjs) stay schema-consistent — without it, the
  ON CONFLICT clause in observation inserts throws.
- spawnSdkProcess: stdio[stdin] from 'ignore' to 'pipe' so the
  supervisor can actually feed the observer's stdin.

Also rebuilds plugin/scripts/{worker-service,context-generator}.cjs.

* fix: walk back to UTF-8 boundary on prompt truncation (Greptile P2)

Plain Buffer.subarray at MAX_USER_PROMPT_BYTES can land mid-codepoint,
which the utf8 decoder silently rewrites to U+FFFD. Walk back over any
continuation bytes (0b10xxxxxx) before decoding so the truncated prompt
ends on a valid sequence boundary instead of a replacement character.

* fix: cross-platform observer-dir containment; clarify SDK stdin pipe

claude-review feedback on PR #2124.

- shouldTrackProject: literal `cwd.startsWith(OBSERVER_SESSIONS_DIR + '/')`
  hard-coded a POSIX separator and missed Windows backslash paths plus any
  trailing-slash variance. Switched to a path.relative-based isWithin()
  helper so Windows hook input under observer-sessions\\... is also excluded.
- spawnSdkProcess: added a comment explaining why stdin must be 'pipe' —
  SpawnedSdkProcess.stdin is typed NonNullable and the Claude Agent SDK
  consumes that pipe; 'ignore' would null it and the null-check below
  would tear the child down on every spawn.

* fix: make Stop hook fire-and-forget; remove dead /api/session/end

The Stop hook was awaiting a 35-second long-poll on /api/session/end,
which the worker held open until the summary-stored event fired (or its
30s server-side timeout elapsed). Followed by another await on
/api/sessions/complete. Three sequential awaits, the middle one a 30s
hold — not fire-and-forget despite repeated requests.

The Stop hook now does ONE thing: POST /api/sessions/summarize to
queue the summary work and return. The worker drives the rest async.
Session-map cleanup is performed by the SessionEnd handler
(session-complete.ts), not duplicated here.

- summarize.ts: drop the /api/session/end long-poll and the trailing
  /api/sessions/complete await; ~40 lines removed; unused
  SessionEndResponse interface gone; header comment rewritten.
- SessionRoutes: delete handleSessionEnd, sessionEndSchema, the
  SERVER_SIDE_SUMMARY_TIMEOUT_MS constant, and the /api/session/end
  route registration. Drop the now-unused ingestEventBus and
  SummaryStoredEvent imports.
- ResponseProcessor + shared.ts + worker-utils.ts: update stale
  comments that referenced the dead endpoint. The IngestEventBus is
  left in place dormant (no listeners) for follow-up cleanup so this
  PR stays focused on the blocker.

Bundle artifact (worker-service.cjs) rebuilt via build-and-sync.

Verification:
- grep '/api/session/end' plugin/scripts/worker-service.cjs → 0
- grep 'timeoutMs:35' plugin/scripts/worker-service.cjs → 0
- Worker restarted clean, /api/health ok at pid 92368

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* deps: bump all dependencies to latest including majors

Upgrades: React 18→19, Express 4→5, Zod 3→4, TypeScript 5→6,
@types/node 20→25, @anthropic-ai/claude-agent-sdk 0.1→0.2,
@clack/prompts 0.9→1.2, plus minors. Adds Daily Maintenance section
to CLAUDE.md mandating latest-version policy across manifests.

Express 5 surfaced a race in Server.listen() where the 'error' handler
was attached after listen() was invoked; refactored to use
http.createServer with both 'error' and 'listening' handlers attached
before listen(), restoring port-conflict rejection semantics.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: surface real chroma errors and add deep status probe

Replace the misleading "Vector search failed - semantic search unavailable.
Install uv... restart the worker." string in SearchManager with the actual
exception text from chroma_query_documents. The lying message blamed `uv`
for any failure — even when the real cause was a chroma-mcp transport
timeout, an empty collection, or a dead subprocess.

Also add /api/chroma/status?deep=1 backed by a new
ChromaMcpManager.probeSemanticSearch() that round-trips a real query
(chroma_list_collections + chroma_query_documents) instead of just
checking the stdio handshake. The cheap default path is unchanged.

Includes the diagnostic plan (PLAN-fix-mcp-search.md) and updated test
fixtures for the new structured failure message.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: rebuild worker-service bundle to match merged src

Bundle was stale after the squash merge of #2124 — it still contained
the old "Install uv... semantic search unavailable" string and lacked
probeSemanticSearch. Rebuilt via bun run build-and-sync.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: address coderabbit feedback on PLAN-fix-mcp-search.md

- replace machine-specific /Users/alexnewman absolute paths with portable
  <repo-root> placeholder (MD-style portability)
- add blank lines around the TypeScript fenced block (MD031)
- tag the bare fenced block with `text` (MD040)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 13:37:40 -07:00
Alex Newman b85419b220 chore: bump version to 12.3.9
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-22 16:11:03 -07:00
Alex Newman c0bfbaaf04 chore: bump version to 12.3.8 2026-04-20 19:51:26 -07:00
Alex Newman fa4ae3b946 chore: bump version to 12.3.7 2026-04-20 13:32:20 -07:00
Alex Newman 8fd3685d6e chore: bump version to 12.3.6
Removes the 300 req/min rate limiter from the worker's HTTP middleware.
The worker is localhost-only (enforced via CORS), so rate limiting was
pointless security theater — but it broke the viewer, which polls logs
and stats frequently enough to trip the limit within seconds.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-20 12:35:52 -07:00
Alex Newman 2f2c03896c chore: bump version to 12.3.5
Restores 25 fixes from v12.3.3 (Issue Blowout 2026) while surgically removing
the bearer-token auth mechanism that broke SessionStart context injection.

Kept hardening: 5MB body limit, 300 req/min rate limiter, path traversal
protection, RestartGuard, WAL checkpoint + journal size limit, FTS5 keyword
fallback, idle session eviction, summarize try/catch, session-init health
wait, pending-messages cleanup.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-20 12:23:26 -07:00
Alex Newman 7e2f463877 chore: bump version to 12.3.4 2026-04-20 11:59:38 -07:00
Alex Newman bfc7de377a revert: roll back v12.3.3 (Issue Blowout 2026)
SessionStart context injection regressed in v12.3.3 — no memory
context is being delivered to new sessions. Rolling back to the
v12.3.2 tree state while the regression is investigated.

Reverts #2080.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-20 11:59:15 -07:00
Alex Newman 502f2fab02 chore: bump version to 12.3.3
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-20 11:43:35 -07:00
Alex Newman 77a2b3a0cb chore: bump version to 12.3.2
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-19 22:20:37 -07:00
Alex Newman f467763340 chore: bump version to 12.3.1
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-19 20:35:01 -07:00
Alex Newman fc10491eae chore: bump version to 12.3.0 2026-04-19 17:35:47 -07:00
Alex Newman bbfb65668f chore: bump version to 12.2.3 2026-04-19 16:30:52 -07:00
Alex Newman b1dfec0f43 chore: bump version to 12.2.2 2026-04-19 14:58:55 -07:00
Alex Newman be730a09ac chore: bump version to 12.2.1
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-19 12:01:43 -07:00
Alex Newman 11666e9ffb chore: bump version to 12.2.0
Publish to npm / publish (push) Has been cancelled
2026-04-17 20:14:22 -07:00
Alex Newman 69080dc291 chore: bump version to 12.1.6
Publish to npm / publish (push) Has been cancelled
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-16 14:31:43 -07:00
Alex Newman d7b4610e27 chore: bump version to 12.1.5
Publish to npm / publish (push) Has been cancelled
2026-04-15 14:40:44 -07:00
Alex Newman ebefae864e chore: bump version to 12.1.4
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Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-15 12:06:52 -07:00
Alex Newman 4ddf57610a chore: bump version to 12.1.3
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2026-04-15 04:26:29 -07:00
Alex Newman 1d7500604f chore: bump version to 12.1.2
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2026-04-15 01:00:38 -07:00
Alex Newman 06b997e3d0 chore: bump version to 12.1.1
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Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 19:14:03 -07:00
kbroughton 8275b3da3b fix(deps): upgrade glob from ^11.0.3 to ^13.0.0 (fixes #1717)
glob@11.x is deprecated by its maintainer and flagged as containing
widely-publicised security vulnerabilities (including ReDoS risks).
The latest stable version is glob@13.0.6.

Compatibility verified: the codebase uses only `globSync` with
`{ nodir, absolute }` options in two files:
- src/services/transcripts/watcher.ts
- scripts/analyze-transformations-smart.js

The `globSync` function signature and these options are identical
in glob@13. No call-site changes are required.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-11 11:00:37 -05:00
Alex Newman b701bf29e6 chore: bump version to 12.1.0
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Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-08 17:31:19 -07:00
Alex Newman 29f2d0bc02 chore: bump version to 12.0.1
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Patch release for the MCP server bun:sqlite crash fix landed in
PR #1645 (commit abd55977).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-07 18:10:04 -07:00
Alex Newman 25ccf46ac0 chore: bump version to 12.0.0
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Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-07 14:22:27 -07:00
Alex Newman 7996dfd5cd Merge branch 'thedotmack/add-lang-parsers' into integration/validation-batch
Adds 24-language support for smart-explore: Kotlin, Swift, Elixir,
Lua, Scala, Bash, Haskell, Zig, CSS, SCSS, TOML, YAML, SQL, Markdown.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-07 13:50:46 -07:00
Alex Newman 95889c7b4e feat: expand smart-explore to 24 languages with markdown support and user-installable grammars
Add 15 new tree-sitter language grammars (Kotlin, Swift, PHP, Elixir, Lua, Scala,
Bash, Haskell, Zig, CSS, SCSS, TOML, YAML, SQL, Markdown) with verified SCM queries.
Add markdown-specific formatting with heading hierarchy, code block detection, and
section-aware unfold. Add user-installable grammar system via .claude-mem.json config
with custom query file support.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-07 13:24:56 -07:00
Alex Newman b0f70b8302 Merge branch 'pr-1619' into integration/validation-batch 2026-04-06 14:18:28 -07:00
Alex Newman 1f808c0be7 Merge branch 'pr-1579' into integration/validation-batch 2026-04-06 14:18:27 -07:00
Alex Newman 18aa5dc4e7 chore: bump version to 11.0.1
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Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-05 21:08:32 -07:00
Octopus 7def736f0a fix: add PHP grammar support to smart-file-read parser (fixes #1617)
PHP was listed as a supported language in CHANGELOG and .php files were
scanned by search.ts, but parser.ts was missing:
- .php extension in LANG_MAP (causing detectLanguage to return 'unknown')
- 'php' entry in GRAMMAR_PACKAGES (no grammar path to resolve)
- PHP query patterns for symbol extraction
- PHP case in getQueryKey()

This meant smart_search/smart_outline/smart_unfold scanned PHP files
but extracted 0 symbols because the grammar could not be resolved.

Changes:
- Add '.php' -> 'php' to LANG_MAP
- Add 'php' -> 'tree-sitter-php/php' to GRAMMAR_PACKAGES
- Add PHP tree-sitter query patterns (functions, methods, classes, interfaces, traits, use statements)
- Add 'php' case to getQueryKey()
- Add tree-sitter-php ^0.24.2 to devDependencies
2026-04-06 10:02:18 +08:00
Alex Newman a7ebc35ee0 chore: bump version to 11.0.0
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Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-04 19:39:28 -07:00
Alex Newman b385570884 chore: bump version to 10.7.2
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2026-04-04 19:22:50 -07:00
Alex Newman bedca129ac chore: bump version to 10.7.1
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2026-04-04 18:59:00 -07:00
Alex Newman c5129ed016 chore: bump version to 10.7.0
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Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-04 14:58:05 -07:00
Alex Newman 8265fc7aa1 Merge remote-tracking branch 'origin/thedotmack/npx-gemini-cli' into thedotmack/npx-gemini-cli
Resolve merge conflicts in adapter index, gemini-cli adapter, and rebuilt CJS artifacts.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-03 13:47:49 -07:00
ming 16f79d6f71 chore: sync plugin manifest metadata from package 2026-04-02 20:07:00 +08:00
Alex Newman ddb57ea598 chore: bump version to 10.6.3
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2026-03-28 19:49:24 -07:00
Alex Newman 3a09c1bb1a feat: add NPX CLI and OpenClaw build pipeline, optimize npm package size
Adds esbuild steps for npx-cli (57KB, Node.js ESM) and openclaw plugin
(12KB). Creates .npmignore to exclude node_modules and Bun binary from
npm package, reducing pack size from 146MB to 2MB.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-23 23:02:18 -07:00
Alex Newman 85eb796b18 feat: add npx CLI entry point with install, runtime, and IDE detection commands
Replaces the old git-clone installer with a direct npm package copy workflow.
Supports 13 IDE auto-detection targets, runtime delegation to Bun worker,
and pure Node.js install path (no Bun required for installation).

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-23 23:02:18 -07:00
Alex Newman 0524fa83cd chore: bump version to 10.6.2
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2026-03-21 14:14:09 -07:00
Alex Newman d54e574251 chore: bump version to 10.6.1
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2026-03-18 14:36:23 -07:00