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Alex Newman 703c64c756 v12.4.3: one-time pollution cleanup migration + v12.4.1/v12.4.2 fixes (#2133) 
* fix: 5 trivial bugs from v12.4.1 issue triage

- #2092: emit CJS-safe banner (no import.meta.url) in worker-service.cjs
- #2100: PreToolUse Read hook timeout 2000s → 60s
- #2131: add "shell": "bash" to every hook for Windows compat
- #2132: Antigravity dir typo .agent → .agents
- #2088: clear inherited MCP servers in worker SDK query() calls

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: stop context overflow loop + block task-notification leak

- SDKAgent: clear memorySessionId on "prompt is too long" so crash-recovery
  starts a fresh SDK session instead of resuming the same poisoned context
  forever (was producing 68+ failed pending_messages on a single stuck
  session in the wild)
- tag-stripping: new isInternalProtocolPayload() predicate; session-init
  hook + SessionRoutes both skip storage when entire prompt is one of
  Claude Code's autonomous protocol blocks (currently <task-notification>;
  conservative deny-list — does NOT touch <command-name>/<command-message>
  which wrap real user slash-commands)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: bump version to 12.4.2

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: update CHANGELOG.md for v12.4.2

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(cleanup): one-time v12.4.3 migration purges observer-sessions and stuck pending_messages

Adds CleanupV12_4_3 module that runs once per data dir on worker startup
(after migrations apply, before Chroma backfill). Drops accumulated pollution
that v12.4.0 (observer-sessions filter) and v12.4.2 (context-overflow guard +
task-notification leak block) prevent from recurring:

- DELETE FROM sdk_sessions WHERE project='observer-sessions' (cascades to
  user_prompts, observations, session_summaries via existing FK ON DELETE CASCADE)
- DELETE FROM pending_messages stuck in 'failed'/'processing' for any session
  with >=10 such rows (poisoned chains from the pre-v12.4.2 retry loop;
  threshold spares legitimate transient failures)
- Wipes ~/.claude-mem/chroma and chroma-sync-state.json so backfillAllProjects
  rebuilds the vector store from cleaned SQLite

Pre-flight checks free disk (1.2x DB size + 100MB) via fs.statfsSync; backs up
via VACUUM INTO with copyFileSync fallback; PRAGMA foreign_keys=ON on the
cleanup connection (off by default in bun:sqlite). Marker file
~/.claude-mem/.cleanup-v12.4.3-applied records backup path and counts. Opt-out
via CLAUDE_MEM_SKIP_CLEANUP_V12_4_3=1.

Verified locally: 311MB DB backed up to 277MB in 943ms; 11 observer sessions
+ 3 cascade rows + 141 stuck pending_messages purged; chroma rebuilt via
backfill. Total cleanup time 1.1s.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: address PR #2133 code review

- SessionRoutes: check isInternalProtocolPayload before stripping tags
  so internal protocol prompts skip the strip work entirely.
- tag-stripping: bound isInternalProtocolPayload input length to
  256KB to prevent ReDoS-class scans on malformed unclosed tags.
- SDKAgent: extract resetSessionForFreshStart helper; both
  context-overflow paths now share one nullification routine.
- worker-service: drop the per-startup "Checking for one-time
  v12.4.3 cleanup" info log — runs every boot even after marker
  exists; the function already logs at debug/warn when relevant.
- tests: add isInternalProtocolPayload edge cases (whitespace,
  attributes, partial tags, unrelated tags, oversize input).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: address Greptile P2 comments on PR #2133

CleanupV12_4_3.ts: derive backup directory and restore-hint path from
effectiveDataDir instead of the module-level BACKUPS_DIR/DB_PATH
constants. The dataDirectory override is meant for test isolation;
the prior version still wrote backups to the production directory.

SessionRoutes.ts: move isInternalProtocolPayload guard to the top of
handleSessionInitByClaudeId, before createSDKSession. The previous
position blocked the user_prompts insert but still created an empty
sdk_sessions row, asymmetric with the hook-layer guard in
session-init.ts.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(cleanup): retry on disk-skip; survive chroma wipe failure

CodeRabbit Major + Claude review:

- Disk pre-flight skip no longer writes the marker. A user temporarily
  low on disk would otherwise have the cleanup permanently disabled
  even after freeing space. Retry on next startup instead.

- Wrap wipeChromaArtifacts in try/catch and write the marker even on
  failure (with chromaWipeError captured). Without this, an rmSync
  permission failure on chroma/ left writeMarker unreached, so every
  subsequent boot re-ran the SQL purge AND created a fresh backup,
  consuming disk indefinitely.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(cleanup): close backup handle before copyFileSync fallback

Claude review:

- backupDb is now closed before falling into the copyFileSync fallback.
  On Windows an open SQLite handle holds a file lock that can prevent
  the fallback copy from reading the source. The previous version only
  closed after both branches completed.

- Add empty-body <task-notification></task-notification> case to the
  isInternalProtocolPayload tests for completeness.

Cascade-row count queries already match the actual FK columns
(content_session_id for user_prompts, memory_session_id for
observations / session_summaries) — no fix needed there.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(cleanup): accurate session count + add migration tests

Claude review v3:

session-init.ts: filter on rawPrompt before the [media prompt]
substitution. Functionally equivalent but explicit — the check no
longer depends on the substitution leaving real protocol payloads
untouched.

CleanupV12_4_3.ts: counts.observerSessions now comes from a pre-DELETE
COUNT(*), not from result.changes. bun:sqlite inflates result.changes
with FTS-trigger and cascade row counts (the user_prompts_fts triggers
inflate a 3-session purge to 19 changes). The previous code logged a
misleading total and wrote it to the marker.

tests/infrastructure/cleanup-v12_4_3.test.ts: happy-path coverage of
the migration against a real on-disk SQLite under a tmpdir. Verifies
observer-session purge with cascades, stuck pending_messages purge,
chroma artifact wipe, marker payload shape, idempotency on re-run, and
CLAUDE_MEM_SKIP_CLEANUP_V12_4_3 opt-out.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(protocol-filter): close two-block false positive; address review

CodeRabbit + Claude review v5:

tag-stripping.ts: PROTOCOL_ONLY_REGEX rewritten with a negative-lookahead
body so a prompt like "<task-notification>x</task-notification> hi
<task-notification>y</task-notification>" no longer matches as a single
outer block — the prior greedy [\s\S]* spanned the middle user text and
would have silently dropped a real prompt. Confirmed via probe.

tag-stripping.test.ts: drop the 50ms wall-clock assertion (CI flake);
add the two-block-with-text case as a regression test.

SessionRoutes.ts: filter on req.body.prompt directly, before the
[media prompt] substitution and 256KB truncation. Mirrors the
session-init.ts hook-layer ordering and ensures a protocol payload
that happens to be near the byte limit isn't truncated before the
filter runs.

cleanup-v12_4_3.test.ts: add stuckCount=9 below-threshold case
verifying pending_messages with <10 stuck rows are preserved.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(cleanup): include WAL/SHM in backup fallback; safer rollback

CodeRabbit Major + Claude review v6:

CleanupV12_4_3.ts: when VACUUM INTO fails and copyFileSync runs, also
copy any -wal/-shm sidecars. The DB is configured WAL mode, so recent
committed pages can live in those files; copying only the .db would
miss them. VACUUM INTO already captures everything in one file, so
the happy path is unaffected.

CleanupV12_4_3.ts: wrap ROLLBACK in try/catch so a no-op rollback
(SQLite already rolled back on a constraint failure) cannot shadow
the original purge error.

SDKAgent.ts: align both context-overflow log levels to error. Both
branches are fatal-recovery paths; the previous warn/error split was
inconsistent and made the throw branch easy to miss in logs.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: pre-count stuck pending_messages; document adjacent-block fall-through

Claude review v7:

CleanupV12_4_3.ts: runStuckPendingPurge now uses a SELECT COUNT(*)
before the DELETE, matching the pattern in runObserverSessionsPurge.
result.changes is reliable today (no FTS on pending_messages) but the
explicit count protects against future schema additions, and keeps
the two purges symmetric.

tag-stripping.test.ts: add test documenting that adjacent protocol
blocks (no user text between) deliberately fall through to storage.
The deny-list is per-block; concatenations are out of scope.

Skipped per project rules / Node API constraints:
- frsize fallback in disk check: Node/Bun StatFs doesn't expose frsize
- VACUUM-INTO comment: comment-only suggestion
- Overflow string constant extraction: low value

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 16:30:34 -07:00

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{
"name": "claude-mem",
"version": "12.4.3",
"description": "Memory compression system for Claude Code - persist context across sessions",
"keywords": [
"claude",
"claude-code",
"claude-agent-sdk",
"mcp",
"plugin",
"memory",
"compression",
"knowledge-graph",
"transcript",
"typescript",
"nodejs"
],
"author": "Alex Newman",
"license": "AGPL-3.0",
"repository": {
"type": "git",
"url": "https://github.com/thedotmack/claude-mem.git"
},
"homepage": "https://github.com/thedotmack/claude-mem#readme",
"bugs": {
"url": "https://github.com/thedotmack/claude-mem/issues"
},
"type": "module",
"bin": {
"claude-mem": "./dist/npx-cli/index.js"
},
"exports": {
".": {
"types": "./dist/index.d.ts",
"import": "./dist/index.js"
},
"./sdk": {
"types": "./dist/sdk/index.d.ts",
"import": "./dist/sdk/index.js"
},
"./modes/*": "./plugin/modes/*"
},
"files": [
"dist",
"plugin/.claude-plugin",
"plugin/CLAUDE.md",
"plugin/package.json",
"plugin/hooks",
"plugin/modes",
"plugin/scripts/*.js",
"plugin/scripts/*.cjs",
"plugin/scripts/CLAUDE.md",
"plugin/skills",
"plugin/ui",
"openclaw"
],
"engines": {
"node": ">=20.0.0",
"bun": ">=1.0.0"
},
"scripts": {
"dev": "npm run build-and-sync",
"build": "node scripts/sync-plugin-manifests.js && node scripts/build-hooks.js",
"build-and-sync": "npm run build && npm run sync-marketplace && sleep 1 && cd ~/.claude/plugins/marketplaces/thedotmack && npm run worker:restart",
"sync-marketplace": "node scripts/sync-marketplace.cjs",
"sync-marketplace:force": "node scripts/sync-marketplace.cjs --force",
"build:binaries": "node scripts/build-worker-binary.js",
"worker:logs": "tail -n 50 ~/.claude-mem/logs/worker-$(date +%Y-%m-%d).log",
"worker:tail": "tail -f 50 ~/.claude-mem/logs/worker-$(date +%Y-%m-%d).log",
"changelog:generate": "node scripts/generate-changelog.js",
"discord:notify": "node scripts/discord-release-notify.js",
"worker:start": "bun plugin/scripts/worker-service.cjs start",
"worker:stop": "bun plugin/scripts/worker-service.cjs stop",
"worker:restart": "bun plugin/scripts/worker-service.cjs restart",
"worker:status": "bun plugin/scripts/worker-service.cjs status",
"queue": "bun scripts/check-pending-queue.ts",
"queue:process": "bun scripts/check-pending-queue.ts --process",
"queue:clear": "bun scripts/clear-failed-queue.ts --all --force",
"claude-md:regenerate": "bun scripts/regenerate-claude-md.ts",
"claude-md:dry-run": "bun scripts/regenerate-claude-md.ts --dry-run",
"translate-readme": "bun scripts/translate-readme/cli.ts -v -o docs/i18n README.md",
"translate:tier1": "npm run translate-readme -- zh zh-tw ja pt-br ko es de fr",
"translate:tier2": "npm run translate-readme -- he ar ru pl cs nl tr uk",
"translate:tier3": "npm run translate-readme -- vi id th hi bn ro sv",
"translate:tier4": "npm run translate-readme -- it el hu fi da no",
"translate:all": "npm run translate:tier1 & npm run translate:tier2 & npm run translate:tier3 & npm run translate:tier4 & wait",
"bug-report": "npx tsx scripts/bug-report/cli.ts",
"cursor:install": "bun plugin/scripts/worker-service.cjs cursor install",
"cursor:uninstall": "bun plugin/scripts/worker-service.cjs cursor uninstall",
"cursor:status": "bun plugin/scripts/worker-service.cjs cursor status",
"cursor:setup": "bun plugin/scripts/worker-service.cjs cursor setup",
"typecheck": "tsc --noEmit && tsc --noEmit -p src/ui/viewer/tsconfig.json",
"typecheck:root": "tsc --noEmit",
"typecheck:viewer": "tsc --noEmit -p src/ui/viewer/tsconfig.json",
"test": "bun test",
"test:sqlite": "bun test tests/sqlite/",
"test:agents": "bun test tests/worker/agents/",
"test:search": "bun test tests/worker/search/",
"test:context": "bun test tests/context/",
"test:infra": "bun test tests/infrastructure/",
"test:server": "bun test tests/server/",
"prepublishOnly": "npm run build",
"release": "np",
"release:patch": "np patch --no-cleanup",
"release:minor": "np minor --no-cleanup",
"release:major": "np major --no-cleanup"
},
"np": {
"yarn": false,
"contents": ".",
"testScript": "test",
"2fa": false
},
"dependencies": {
"@anthropic-ai/claude-agent-sdk": "^0.2.119",
"@clack/prompts": "^1.2.0",
"@modelcontextprotocol/sdk": "^1.29.0",
"ansi-to-html": "^0.7.2",
"dompurify": "^3.4.1",
"express": "^5.2.1",
"glob": "^13.0.6",
"handlebars": "^4.7.9",
"picocolors": "^1.1.1",
"react": "^19.2.5",
"react-dom": "^19.2.5",
"yaml": "^2.8.3",
"zod": "^4.3.6",
"zod-to-json-schema": "^3.25.2"
},
"devDependencies": {
"@derekstride/tree-sitter-sql": "^0.3.11",
"@tree-sitter-grammars/tree-sitter-lua": "^0.4.1",
"@tree-sitter-grammars/tree-sitter-markdown": "^0.3.2",
"@tree-sitter-grammars/tree-sitter-toml": "^0.7.0",
"@tree-sitter-grammars/tree-sitter-yaml": "^0.7.1",
"@tree-sitter-grammars/tree-sitter-zig": "^1.1.2",
"@types/bun": "^1.3.13",
"@types/cors": "^2.8.19",
"@types/dompurify": "^3.2.0",
"@types/express": "^5.0.6",
"@types/node": "^25.6.0",
"@types/react": "^19.2.14",
"@types/react-dom": "^19.2.3",
"esbuild": "^0.28.0",
"np": "^11.2.0",
"tree-sitter-bash": "^0.25.1",
"tree-sitter-c": "^0.24.1",
"tree-sitter-cli": "^0.26.8",
"tree-sitter-cpp": "^0.23.4",
"tree-sitter-css": "^0.25.0",
"tree-sitter-elixir": "^0.3.5",
"tree-sitter-go": "^0.25.0",
"tree-sitter-haskell": "^0.23.1",
"tree-sitter-java": "^0.23.5",
"tree-sitter-javascript": "^0.25.0",
"tree-sitter-kotlin": "^0.3.8",
"tree-sitter-php": "^0.24.2",
"tree-sitter-python": "^0.25.0",
"tree-sitter-ruby": "^0.23.1",
"tree-sitter-rust": "^0.24.0",
"tree-sitter-scala": "^0.24.0",
"tree-sitter-scss": "^1.0.0",
"tree-sitter-swift": "^0.7.1",
"tree-sitter-typescript": "^0.23.2",
"ts-prune": "^0.10.3",
"tsx": "^4.21.0",
"typescript": "^6.0.3"
},
"optionalDependencies": {
"tree-kill": "^1.2.2"
},
"trustedDependencies": [
"esbuild",
"tree-sitter-c",
"tree-sitter-cli",
"tree-sitter-cpp",
"tree-sitter-go",
"tree-sitter-java",
"tree-sitter-javascript",
"tree-sitter-python",
"tree-sitter-ruby",
"tree-sitter-rust",
"tree-sitter-typescript"
]
}
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