* fix: use bun install in sync, add node-addon-api for sharp, consolidate PendingMessageStore
- Switch sync-marketplace from npm to bun install
- Add node-addon-api as dev dep so sharp builds under bun
- Consolidate duplicate PendingMessageStore instantiation in worker-service finally block
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* build assets
---------
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
Chroma requires client-side embeddings — the server is storage only.
The previous commit incorrectly removed @chroma-core/default-embed.
Uses DefaultEmbeddingFunction({ wasm: true }) which forces the WASM
backend instead of native ONNX binaries. Same model (all-MiniLM-L6-v2),
same embeddings, but works on all platforms without segfaults or
ENOENT errors (#1104, #1105, #1110).
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Resolve conflicts between Chroma HTTP server PR and main branch changes
(folder CLAUDE.md, exclusion settings, Zscaler SSL, transport cleanup).
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Add docs/i18n/README.zh-tw.md with Taiwan Traditional Chinese translation
- Update language links in README.md and all i18n translations
- Add 🇹🇼 繁體中文 link after 🇨🇳 中文 in language selector
PR #896 identified a valid XSS concern in TerminalPreview.tsx but was
broken (missing DOMPurify import and dependency). The existing
escapeXML:true on AnsiToHtml already mitigates the vector, but
DOMPurify adds defense-in-depth sanitization.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Includes PR #745 isolated credentials fix - prevents API key hijacking
from random project .env files by using centralized credentials from
~/.claude-mem/.env
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix: add idle timeout to prevent zombie observer processes
Root cause fix for zombie observer accumulation. The SessionQueueProcessor
iterator now exits gracefully after 3 minutes of inactivity instead of
waiting forever for messages.
Changes:
- Add IDLE_TIMEOUT_MS constant (3 minutes)
- waitForMessage() now returns boolean and accepts timeout parameter
- createIterator() tracks lastActivityTime and exits on idle timeout
- Graceful exit via return (not throw) allows SDK to complete cleanly
This addresses the root cause that PR #848 worked around with pattern
matching. Observer processes now self-terminate, preventing accumulation
when session-complete hooks don't fire.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix: trigger abort on idle timeout to actually kill subprocess
The previous implementation only returned from the iterator on idle timeout,
but this doesn't terminate the Claude subprocess - it just stops yielding
messages. The subprocess stays alive as a zombie because:
1. Returning from createIterator() ends the generator
2. The SDK closes stdin via transport.endInput()
3. But the subprocess may not exit on stdin EOF
4. No abort signal is sent to kill it
Fix: Add onIdleTimeout callback that SessionManager uses to call
session.abortController.abort(). This sends SIGTERM to the subprocess
via the SDK's ProcessTransport abort handler.
Verified by Codex analysis of the SDK internals:
- abort() triggers ProcessTransport abort handler → SIGTERM
- transport.close() sends SIGTERM → escalates to SIGKILL after 5s
- Just closing stdin is NOT sufficient to guarantee subprocess exit
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix: add idle timeout to prevent zombie observer processes
Also cleaned up hooks.json to remove redundant start commands.
The hook command handler now auto-starts the worker if not running,
which is how it should have been since we changed to auto-start.
This maintenance change was done manually.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix: resolve race condition in session queue idle timeout detection
- Reset timer on spurious wakeup when queue is empty but duration check fails
- Use optional chaining for onIdleTimeout callback
- Include threshold value in idle timeout log message for better diagnostics
- Add comprehensive unit tests for SessionQueueProcessor
Fixes PR #856 review feedback.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: migrate installer to Setup hook
- Add plugin/scripts/setup.sh for one-time dependency setup
- Add Setup hook to hooks.json (triggers via claude --init)
- Remove smart-install.js from SessionStart hook
- Keep smart-install.js as manual fallback for Windows/auto-install
Setup hook handles:
- Bun detection with fallback locations
- uv detection (optional, for Chroma)
- Version marker to skip redundant installs
- Clear error messages with install instructions
* feat: add np for one-command npm releases
- Add np as dev dependency
- Add release, release:patch, release:minor, release:major scripts
- Add prepublishOnly hook to run build before publish
- Configure np (no yarn, include all contents, run tests)
* fix: reduce PostToolUse hook timeout to 30s
PostToolUse runs on every tool call, 120s was excessive and could cause
hangs. Reduced to 30s for responsive behavior.
* docs: add PR shipping report
Analyzed 6 PRs for shipping readiness:
- #856: Ready to merge (idle timeout fix)
- #700, #722, #657: Have conflicts, need rebase
- #464: Contributor PR, too large (15K+ lines)
- #863: Needs manual review
Includes shipping strategy and conflict resolution order.
* MAESTRO: Verify PR #856 test suite passes
All 797 tests pass (3 skipped, 0 failures). The 11 SessionQueueProcessor
idle timeout tests all pass with 20 expect() assertions verified.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* MAESTRO: Verify PR #856 build passes
- Ran npm run build successfully with no TypeScript errors
- All artifacts generated (worker-service, mcp-server, context-generator, viewer UI)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* MAESTRO: Code review PR #856 implementation verified
Verified all requirements in SessionQueueProcessor.ts:
- IDLE_TIMEOUT_MS = 180000ms (3 minutes)
- waitForMessage() accepts timeout parameter
- lastActivityTime reset on spurious wakeup (race condition fix)
- Graceful exit logs include thresholdMs parameter
- 11 comprehensive test cases in SessionQueueProcessor.test.ts
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
Co-authored-by: bigph00t <166455923+bigph00t@users.noreply.github.com>
Co-authored-by: root <root@srv1317155.hstgr.cloud>
- Added @chroma-core/default-embed dependency for local embeddings
- Updated ChromaSync to use DefaultEmbeddingFunction with collections
- Added isServerReachable() async method for reliable server detection
- Fixed start() to detect and reuse existing Chroma servers
- Updated build script to externalize native ONNX binaries
- Added runtime dependency to plugin/package.json
The embedding function uses all-MiniLM-L6-v2 model locally via ONNX,
eliminating need for external embedding API calls.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Updated chromadb from ^1.9.2 to ^3.2.2 (includes CLI binary)
- Changed heartbeat endpoint from /api/v1 to /api/v2
The 1.9.x version did not include the CLI, causing `npx chroma run` to fail.
Version 3.2.2 includes the chroma CLI and uses the v2 API.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Replace MCP subprocess approach with persistent Chroma HTTP server for
improved performance and reliability. This re-enables Chroma on Windows
by eliminating the subprocess spawning that caused console popups.
Changes:
- NEW: ChromaServerManager.ts - Manages local Chroma server lifecycle
via `npx chroma run`
- REFACTOR: ChromaSync.ts - Uses chromadb npm package's ChromaClient
instead of MCP subprocess (removes Windows disabling)
- UPDATE: worker-service.ts - Starts Chroma server on initialization
- UPDATE: GracefulShutdown.ts - Stops Chroma server on shutdown
- UPDATE: SettingsDefaultsManager.ts - New Chroma configuration options
- UPDATE: build-hooks.js - Mark optional chromadb deps as external
Benefits:
- Eliminates subprocess spawn latency on first query
- Single server process instead of per-operation subprocesses
- No Python/uvx dependency for local mode
- Re-enables Chroma vector search on Windows
- Future-ready for cloud-hosted Chroma (claude-mem pro)
- Cross-platform: Linux, macOS, Windows
Configuration:
CLAUDE_MEM_CHROMA_MODE=local|remote
CLAUDE_MEM_CHROMA_HOST=127.0.0.1
CLAUDE_MEM_CHROMA_PORT=8000
CLAUDE_MEM_CHROMA_SSL=false
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* docs: add folder index generator plan
RFC for auto-generating folder-level CLAUDE.md files with observation
timelines. Includes IDE symlink support and root CLAUDE.md integration.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: implement folder index generator (Phase 1)
Add automatic CLAUDE.md generation for folders containing observed files.
This enables IDE context providers to access relevant memory observations.
Core modules:
- FolderDiscovery: Extract folders from observation file paths
- FolderTimelineCompiler: Compile chronological timeline per folder
- ClaudeMdGenerator: Write CLAUDE.md with tag-based content replacement
- FolderIndexOrchestrator: Coordinate regeneration on observation save
Integration:
- Event-driven regeneration after observation save in ResponseProcessor
- HTTP endpoints for folder discovery, timeline, and manual generation
- Settings for enabling/configuring folder index behavior
The <claude-mem-context> tag wrapping ensures:
- Manual CLAUDE.md content is preserved
- Auto-generated content won't be recursively observed
- Clean separation between user and system content
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: add updateFolderClaudeMd function to CursorHooksInstaller
Adds function to update CLAUDE.md files for folders touched by observations.
Uses existing /api/search/by-file endpoint, preserves content outside
<claude-mem-context> tags, and writes atomically via temp file + rename.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: hook updateFolderClaudeMd into ResponseProcessor
Calls updateFolderClaudeMd after observation save to update folder-level
CLAUDE.md files. Uses fire-and-forget pattern with error logging.
Extracts file paths from saved observations and workspace path from registry.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: add timeline formatting for folder CLAUDE.md files
Implements formatTimelineForClaudeMd function that transforms API response
into compact markdown table format. Converts emojis to text labels,
handles ditto marks for timestamps, and groups under "Recent" header.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor: remove old folder-index implementation
Deletes redundant folder-index services that were replaced by the simpler
updateFolderClaudeMd approach in CursorHooksInstaller.ts.
Removed:
- src/services/folder-index/ directory (5 files)
- FolderIndexRoutes.ts
- folder-index settings from SettingsDefaultsManager
- folder-index route registration from worker-service
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: add worktree-aware project filtering for unified timelines
Detect git worktrees and show both parent repo and worktree observations
in the session start timeline. When running in a worktree, the context
now includes observations from both projects, interleaved chronologically.
- Add detectWorktree() utility to identify worktree directories
- Add getProjectContext() to return parent + worktree projects
- Update context hook to pass multi-project queries
- Add queryObservationsMulti() and querySummariesMulti() for IN clauses
- Maintain backward compatibility with single-project queries
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>
* fix: restructure logging to prove session correctness and reduce noise
Add critical logging at each stage of the session lifecycle to prove the session ID chain (contentSessionId → sessionDbId → memorySessionId) stays aligned. New logs include CREATED, ENQUEUED, CLAIMED, MEMORY_ID_CAPTURED, STORING, and STORED. Move intermediate migration and backfill progress logs to DEBUG level to reduce noise, keeping only essential initialization and completion logs at INFO level.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>
* refactor: extract folder CLAUDE.md utils to shared location
Moves folder CLAUDE.md utilities from CursorHooksInstaller to a new
shared utils file. Removes Cursor registry dependency - file paths
from observations are already absolute, no workspace lookup needed.
New file: src/utils/claude-md-utils.ts
- replaceTaggedContent() - preserves user content outside tags
- writeClaudeMdToFolder() - atomic writes with tag preservation
- formatTimelineForClaudeMd() - API response to compact markdown
- updateFolderClaudeMdFiles() - orchestrates folder updates
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix: trigger folder CLAUDE.md updates when observations are saved
The folder CLAUDE.md update was previously only triggered in
syncAndBroadcastSummary, but summaries run with observationCount=0
(observations are saved separately). Moved the update logic to
syncAndBroadcastObservations where file paths are available.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* all the claudes
* test: add unit tests for claude-md-utils pure functions
Add 11 tests covering replaceTaggedContent and formatTimelineForClaudeMd:
- replaceTaggedContent: empty content, tag replacement, appending, partial tags
- formatTimelineForClaudeMd: empty input, parsing, ditto marks, session IDs
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test: add integration tests for file operation functions
Add 9 tests for writeClaudeMdToFolder and updateFolderClaudeMdFiles:
- writeClaudeMdToFolder: folder creation, content preservation, nested dirs, atomic writes
- updateFolderClaudeMdFiles: empty skip, fetch/write, deduplication, error handling
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test: add unit tests for timeline-formatting utilities
Add 14 tests for extractFirstFile and groupByDate functions:
- extractFirstFile: relative paths, fallback to files_read, null handling, invalid JSON
- groupByDate: empty arrays, date grouping, chronological sorting, item preservation
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* chore: rebuild plugin scripts with merged features
* docs: add project-specific CLAUDE.md with architecture and development notes
* fix: exclude project root from auto-generated CLAUDE.md updates
Skip folders containing .git directory when auto-updating subfolder
CLAUDE.md files. This ensures:
1. Root CLAUDE.md remains user-managed and untouched by the system
2. SessionStart context injection stays pristine throughout the session
3. Subfolder CLAUDE.md files continue to receive live context updates
4. Cleaner separation between user-authored root docs and auto-generated folder indexes
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix: prevent crash from resuming stale SDK sessions on worker restart
When the worker restarts, it was incorrectly passing the `resume` parameter
to INIT prompts (lastPromptNumber=1) when a memorySessionId existed from a
previous SDK session. This caused "Claude Code process exited with code 1"
crashes because the SDK tried to resume into a session that no longer exists.
Root cause: The resume condition only checked `hasRealMemorySessionId` but
did not verify that this was a CONTINUATION prompt (lastPromptNumber > 1).
Fix: Add `session.lastPromptNumber > 1` check to the resume condition:
- Before: `...(hasRealMemorySessionId && { resume: session.memorySessionId })`
- After: `...(hasRealMemorySessionId && session.lastPromptNumber > 1 && { resume: ... })`
Also added:
- Enhanced debug logging that warns when skipping resume for INIT prompts
- Unit tests in tests/sdk-agent-resume.test.ts (9 test cases)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix: properly handle Chroma MCP connection errors
Previously, ensureCollection() caught ALL errors from chroma_get_collection_info
and assumed they meant "collection doesn't exist", triggering unnecessary
collection creation attempts. Connection errors like "Not connected" or
"MCP error -32000: Connection closed" would cascade into failed creation attempts.
Similarly, queryChroma() would silently return empty results when the MCP call
failed, masking the underlying connection problem.
Changes:
- ensureCollection(): Detect connection errors and re-throw immediately instead
of attempting collection creation
- queryChroma(): Wrap MCP call in try-catch and throw connection errors instead
of returning empty results
- Both methods reset connection state (connected=false, client=null) on
connection errors so subsequent operations can attempt to reconnect
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* pushed
* fix: scope regenerate-claude-md.ts to current working directory
Critical bug fix: The script was querying ALL observations from the database
across ALL projects ever recorded (1396+ folders), then attempting to write
CLAUDE.md files everywhere including other projects, non-existent paths, and
ignored directories.
Changes:
- Use git ls-files to discover folders (respects .gitignore automatically)
- Filter database query to current project only (by folder name)
- Use relative paths for database queries (matches storage format)
- Add --clean flag to remove auto-generated CLAUDE.md files
- Add fallback directory walker for non-git repos
Now correctly scopes to 26 folders with observations instead of 1396+.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* docs and adjustments
* fix: cleanup mode strips tags instead of deleting files blindly
The cleanup mode was incorrectly deleting entire files that contained
<claude-mem-context> tags. The correct behavior (per original design):
1. Strip the <claude-mem-context>...</claude-mem-context> section
2. If empty after stripping → delete the file
3. If has remaining content → save the stripped version
Now properly preserves user content in CLAUDE.md files while removing
only the auto-generated sections.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* deleted some files
* chore: regenerate folder CLAUDE.md files with fixed script
Regenerated 23 folder CLAUDE.md files using the corrected script that:
- Scopes to current working directory only
- Uses git ls-files to respect .gitignore
- Filters by project name
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* Update CLAUDE.md files for January 5, 2026
- Regenerated and staged 23 CLAUDE.md files with a mix of new and modified content.
- Fixed cleanup mode to properly strip tags instead of deleting files blindly.
- Cleaned up empty CLAUDE.md files from various directories, including ~/.claude and ~/Scripts.
- Conducted dry-run cleanup that identified a significant reduction in auto-generated CLAUDE.md files.
- Removed the isAutoGeneratedClaudeMd function due to incorrect file deletion behavior.
* feat: use settings for observation limit in batch regeneration script
Replace hard-coded limit of 10 with configurable CLAUDE_MEM_CONTEXT_OBSERVATIONS
setting (default: 50). This allows users to control how many observations appear
in folder CLAUDE.md files.
Changes:
- Import SettingsDefaultsManager and load settings at script startup
- Use OBSERVATION_LIMIT constant derived from settings at both call sites
- Remove stale default parameter from findObservationsByFolder function
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: use settings for observation limit in event-driven updates
Replace hard-coded limit of 10 in updateFolderClaudeMdFiles with
configurable CLAUDE_MEM_CONTEXT_OBSERVATIONS setting (default: 50).
Changes:
- Import SettingsDefaultsManager and os module
- Load settings at function start (once, not in loop)
- Use limit from settings in API call
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: Implement configurable observation limits and enhance search functionality
- Added configurable observation limits to batch regeneration scripts.
- Enhanced SearchManager to handle folder queries and normalize parameters.
- Introduced methods to check for direct child files in observations and sessions.
- Updated SearchOptions interface to include isFolder flag for filtering.
- Improved code quality with comprehensive reviews and anti-pattern checks.
- Cleaned up auto-generated CLAUDE.md files across various directories.
- Documented recent changes and improvements in CLAUDE.md files.
* build asset
* Project Context from Claude-Mem auto-added (can be auto removed at any time)
* CLAUDE.md updates
* fix: resolve CLAUDE.md files to correct directory in worktree setups
When using git worktrees, CLAUDE.md files were being written relative to
the worker's process.cwd() instead of the actual project directory. This
fix threads the project's cwd from message processing through to the file
writing utilities, ensuring CLAUDE.md files are created in the correct
project directory regardless of where the worker was started.
Changes:
- Add projectRoot parameter to updateFolderClaudeMdFiles for path resolution
- Thread projectRoot through ResponseProcessor call chain
- Track lastCwd from messages in SDKAgent, GeminiAgent, OpenRouterAgent
- Add tests for relative/absolute path handling with projectRoot
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* more project context updates
* context updates
* fix: preserve actual dates in folder CLAUDE.md generation
Previously, formatTimelineForClaudeMd used today's date for all
observations because the API only returned time (e.g., "4:30 PM")
without date information. This caused all historical observations
to appear as if they happened today.
Changes:
- SearchManager.findByFile now groups results by date with headers
(e.g., "### Jan 4, 2026") matching formatSearchResults behavior
- formatTimelineForClaudeMd now parses these date headers and uses
the correct date when constructing epochs for date grouping
The timeline dates are critical for claude-mem context - LLMs need
accurate temporal context to understand when work happened.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* build: update worker assets with date parsing fix
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* claude-mem context: Fixed critical date parsing bug in PR #556
* fix: address PR #556 review items
- Use getWorkerHost() instead of hard-coded 127.0.0.1 in claude-md-utils
- Add error message and stack details to FOLDER_INDEX logging
- Add 5 new tests for worktree/projectRoot path resolution
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* Refactor CLAUDE documentation across multiple components and tests
- Updated CLAUDE.md files in src/ui/viewer, src/ui/viewer/constants, src/ui/viewer/hooks, tests/server, tests/worker/agents, and plans to reflect recent changes and improvements.
- Removed outdated entries and consolidated recent activities for clarity.
- Enhanced documentation for hooks, settings, and pagination implementations.
- Streamlined test suite documentation for server and worker agents, indicating recent test audits and cleanup efforts.
- Adjusted plans to remove obsolete entries and focus on current implementation strategies.
* docs: comprehensive v9.0 documentation audit and updates
- Add usage/folder-context to docs.json navigation (was documented but hidden!)
- Update introduction.mdx with v9.0 release notes (Live Context, Worktree Support, Windows Fixes)
- Add CLAUDE_MEM_WORKER_HOST setting to configuration.mdx
- Add Folder Context Files section with link to detailed docs
- Document worktree support in folder-context.mdx
- Update terminology from "mem-search skill" to "MCP tools" throughout active docs
- Update Search Pipeline in architecture/overview.mdx
- Update usage/getting-started.mdx with MCP tools terminology
- Update usage/claude-desktop.mdx title and terminology
- Update hooks-architecture.mdx reference
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: add recent activity log for worker CLI with detailed entries
* chore: update CLAUDE.md context files
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: add brainstorming report for CLAUDE.md distribution architecture
---------
Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
Display current date/time in context header for both terminal (Color)
and markdown formatters. Shows format like "2026-01-04 2:46am EST".
Also bumps version to 8.5.9.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix: prevent memory_session_id from equaling content_session_id
The bug: memory_session_id was initialized to contentSessionId as a
"placeholder for FK purposes". This caused the SDK resume logic to
inject memory agent messages into the USER's Claude Code transcript,
corrupting their conversation history.
Root cause:
- SessionStore.createSDKSession initialized memory_session_id = contentSessionId
- SDKAgent checked memorySessionId !== contentSessionId but this check
only worked if the session was fetched fresh from DB
The fix:
- SessionStore: Initialize memory_session_id as NULL, not contentSessionId
- SDKAgent: Simple truthy check !!session.memorySessionId (NULL = fresh start)
- Database migration: Ran UPDATE to set memory_session_id = NULL for 1807
existing sessions that had the bug
Also adds [ALIGNMENT] logging across the session lifecycle to help debug
session continuity issues:
- Hook entry: contentSessionId + promptNumber
- DB lookup: contentSessionId → memorySessionId mapping proof
- Resume decision: shows which memorySessionId will be used for resume
- Capture: logs when memorySessionId is captured from first SDK response
UI: Added "Alignment" quick filter button in LogsModal to show only
alignment logs for debugging session continuity.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor: improve error handling in worker-service.ts
- Fix GENERIC_CATCH anti-patterns by logging full error objects instead of just messages
- Add [ANTI-PATTERN IGNORED] markers for legitimate cases (cleanup, hot paths)
- Simplify error handling comments to be more concise
- Improve httpShutdown() error discrimination for ECONNREFUSED
- Reduce LARGE_TRY_BLOCK issues in initialization code
Part of anti-pattern cleanup plan (132 total issues)
* refactor: improve error logging in SearchManager.ts
- Pass full error objects to logger instead of just error.message
- Fixes PARTIAL_ERROR_LOGGING anti-patterns (10 instances)
- Better debugging visibility when Chroma queries fail
Part of anti-pattern cleanup (133 remaining)
* refactor: improve error logging across SessionStore and mcp-server
- SessionStore.ts: Fix error logging in column rename utility
- mcp-server.ts: Log full error objects instead of just error.message
- Improve error handling in Worker API calls and tool execution
Part of anti-pattern cleanup (133 remaining)
* Refactor hooks to streamline error handling and loading states
- Simplified error handling in useContextPreview by removing try-catch and directly checking response status.
- Refactored usePagination to eliminate try-catch, improving readability and maintaining error handling through response checks.
- Cleaned up useSSE by removing unnecessary try-catch around JSON parsing, ensuring clarity in message handling.
- Enhanced useSettings by streamlining the saving process, removing try-catch, and directly checking the result for success.
* refactor: add error handling back to SearchManager Chroma calls
- Wrap queryChroma calls in try-catch to prevent generator crashes
- Log Chroma errors as warnings and fall back gracefully
- Fixes generator failures when Chroma has issues
- Part of anti-pattern cleanup recovery
* feat: Add generator failure investigation report and observation duplication regression report
- Created a comprehensive investigation report detailing the root cause of generator failures during anti-pattern cleanup, including the impact, investigation process, and implemented fixes.
- Documented the critical regression causing observation duplication due to race conditions in the SDK agent, outlining symptoms, root cause analysis, and proposed fixes.
* fix: address PR #528 review comments - atomic cleanup and detector improvements
This commit addresses critical review feedback from PR #528:
## 1. Atomic Message Cleanup (Fix Race Condition)
**Problem**: SessionRoutes.ts generator error handler had race condition
- Queried messages then marked failed in loop
- If crash during loop → partial marking → inconsistent state
**Solution**:
- Added `markSessionMessagesFailed()` to PendingMessageStore.ts
- Single atomic UPDATE statement replaces loop
- Follows existing pattern from `resetProcessingToPending()`
**Files**:
- src/services/sqlite/PendingMessageStore.ts (new method)
- src/services/worker/http/routes/SessionRoutes.ts (use new method)
## 2. Anti-Pattern Detector Improvements
**Problem**: Detector didn't recognize logger.failure() method
- Lines 212 & 335 already included "failure"
- Lines 112-113 (PARTIAL_ERROR_LOGGING detection) did not
**Solution**: Updated regex patterns to include "failure" for consistency
**Files**:
- scripts/anti-pattern-test/detect-error-handling-antipatterns.ts
## 3. Documentation
**PR Comment**: Added clarification on memory_session_id fix location
- Points to SessionStore.ts:1155
- Explains why NULL initialization prevents message injection bug
## Review Response
Addresses "Must Address Before Merge" items from review:
✅ Clarified memory_session_id bug fix location (via PR comment)
✅ Made generator error handler message cleanup atomic
❌ Deferred comprehensive test suite to follow-up PR (keeps PR focused)
## Testing
- Build passes with no errors
- Anti-pattern detector runs successfully
- Atomic cleanup follows proven pattern from existing methods
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Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* fix: FOREIGN KEY constraint and missing failed_at_epoch column
Two critical bugs fixed:
1. Missing failed_at_epoch column in pending_messages table
- Added migration 20 to create the column
- Fixes error when trying to mark messages as failed
2. FOREIGN KEY constraint failed when storing observations
- All three agents (SDK, Gemini, OpenRouter) were passing
session.contentSessionId instead of session.memorySessionId
- storeObservationsAndMarkComplete expects memorySessionId
- Added null check and clear error message
However, observations still not saving - see investigation report.
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Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* Refactor hook input parsing to improve error handling
- Added a nested try-catch block in new-hook.ts, save-hook.ts, and summary-hook.ts to handle JSON parsing errors more gracefully.
- Replaced direct error throwing with logging of the error details using logger.error.
- Ensured that the process exits cleanly after handling input in all three hooks.
* docs: add monolith refactor report with system breakdown
Comprehensive analysis of codebase identifying:
- 14 files over 500 lines requiring refactoring
- 3 critical monoliths (SessionStore, SearchManager, worker-service)
- 80% code duplication across agent files
- 5-phase refactoring roadmap with domain-based architecture
* docs: update monolith report post session-logging merge
- SessionStore grew to 2,011 lines (49 methods) - highest priority
- SearchManager reduced to 1,778 lines (improved)
- Agent files reduced by ~45 lines combined
- Added trend indicators and post-merge observations
- Core refactoring proposal remains valid
* refactor(sqlite): decompose SessionStore into modular architecture
Extract the 2011-line SessionStore.ts monolith into focused, single-responsibility
modules following grep-optimized progressive disclosure pattern:
New module structure:
- sessions/ - Session creation and retrieval (create.ts, get.ts, types.ts)
- observations/ - Observation storage and queries (store.ts, get.ts, recent.ts, files.ts, types.ts)
- summaries/ - Summary storage and queries (store.ts, get.ts, recent.ts, types.ts)
- prompts/ - User prompt management (store.ts, get.ts, types.ts)
- timeline/ - Cross-entity timeline queries (queries.ts)
- import/ - Bulk import operations (bulk.ts)
- migrations/ - Database migrations (runner.ts)
New coordinator files:
- Database.ts - ClaudeMemDatabase class with re-exports
- transactions.ts - Atomic cross-entity transactions
- Named re-export facades (Sessions.ts, Observations.ts, etc.)
Key design decisions:
- All functions take `db: Database` as first parameter (functional style)
- Named re-exports instead of index.ts for grep-friendliness
- SessionStore retained as backward-compatible wrapper
- Target file size: 50-150 lines (60% compliance)
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor(agents): extract shared logic into modular architecture
Consolidate duplicate code across SDKAgent, GeminiAgent, and OpenRouterAgent
into focused utility modules. Total reduction: 500 lines (29%).
New modules in src/services/worker/agents/:
- ResponseProcessor.ts: Atomic DB transactions, Chroma sync, SSE broadcast
- ObservationBroadcaster.ts: SSE event formatting and dispatch
- SessionCleanupHelper.ts: Session state cleanup and stuck message reset
- FallbackErrorHandler.ts: Provider error detection for fallback logic
- types.ts: Shared interfaces (WorkerRef, SSE payloads, StorageResult)
Bug fix: SDKAgent was incorrectly using obs.files instead of obs.files_read
and hardcoding files_modified to empty array.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor(search): extract search strategies into modular architecture
Decompose SearchManager into focused strategy pattern with:
- SearchOrchestrator: Coordinates strategy selection and fallback
- ChromaSearchStrategy: Vector semantic search via ChromaDB
- SQLiteSearchStrategy: Filter-only queries for date/project/type
- HybridSearchStrategy: Metadata filtering + semantic ranking
- ResultFormatter: Markdown table formatting for results
- TimelineBuilder: Chronological timeline construction
- Filter modules: DateFilter, ProjectFilter, TypeFilter
SearchManager now delegates to new infrastructure while maintaining
full backward compatibility with existing public API.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor(context): decompose context-generator into modular architecture
Extract 660-line monolith into focused components:
- ContextBuilder: Main orchestrator (~160 lines)
- ContextConfigLoader: Configuration loading
- TokenCalculator: Token budget calculations
- ObservationCompiler: Data retrieval and query building
- MarkdownFormatter/ColorFormatter: Output formatting
- Section renderers: Header, Timeline, Summary, Footer
Maintains full backward compatibility - context-generator.ts now
delegates to new ContextBuilder while preserving public API.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor(worker): decompose worker-service into modular infrastructure
Split 2000+ line monolith into focused modules:
Infrastructure:
- ProcessManager: PID files, signal handlers, child process cleanup
- HealthMonitor: Port checks, health polling, version matching
- GracefulShutdown: Coordinated cleanup on exit
Server:
- Server: Express app setup, core routes, route registration
- Middleware: Re-exports from existing middleware
- ErrorHandler: Centralized error handling with AppError class
Integrations:
- CursorHooksInstaller: Full Cursor IDE integration (registry, hooks, MCP)
WorkerService now acts as thin coordinator wiring all components together.
Maintains full backward compatibility with existing public API.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* Refactor session queue processing and database interactions
- Implement claim-and-delete pattern in SessionQueueProcessor to simplify message handling and eliminate duplicate processing.
- Update PendingMessageStore to support atomic claim-and-delete operations, removing the need for intermediate processing states.
- Introduce storeObservations method in SessionStore for simplified observation and summary storage without message tracking.
- Remove deprecated methods and clean up session state management in worker agents.
- Adjust response processing to accommodate new storage patterns, ensuring atomic transactions for observations and summaries.
- Remove unnecessary reset logic for stuck messages due to the new queue handling approach.
* Add duplicate observation cleanup script
Script to clean up duplicate observations created by the batching bug
where observations were stored once per message ID instead of once per
observation. Includes safety checks to always keep at least one copy.
Usage:
bun scripts/cleanup-duplicates.ts # Dry run
bun scripts/cleanup-duplicates.ts --execute # Delete duplicates
bun scripts/cleanup-duplicates.ts --aggressive # Ignore time window
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(sqlite): add comprehensive test suite for SQLite repositories
Add 44 tests across 5 test files covering:
- Sessions: CRUD operations and schema validation
- Observations: creation, retrieval, filtering, and ordering
- Prompts: persistence and association with observations
- Summaries: generation tracking and session linkage
- Transactions: context management and rollback behavior
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(worker): add comprehensive test suites for worker agent modules
Add test coverage for response-processor, observation-broadcaster,
session-cleanup-helper, and fallback-error-handler agents. Fix type
import issues across search module (use `import type` for type-only
imports) and update worker-service main module detection for ESM/CJS
compatibility.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(search): add comprehensive test suites for search module
Add test coverage for the refactored search architecture:
- SearchOrchestrator: query coordination and caching
- ResultFormatter: pagination, sorting, and field mapping
- SQLiteSearchStrategy: database search operations
- ChromaSearchStrategy: vector similarity search
- HybridSearchStrategy: combined search with score fusion
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(context): add comprehensive test suites for context-generator modules
Add test coverage for the modular context-generator architecture:
- context-builder.test.ts: Tests for context building and result assembly
- observation-compiler.test.ts: Tests for observation compilation with privacy tags
- token-calculator.test.ts: Tests for token budget calculations
- formatters/markdown-formatter.test.ts: Tests for markdown output formatting
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(infrastructure): add comprehensive test suites for worker infrastructure modules
Add test coverage for graceful-shutdown, health-monitor, and process-manager
modules extracted during the worker-service refactoring. All 32 tests pass.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* test(server): add comprehensive test suites for server modules
Add test coverage for Express server infrastructure:
- error-handler.test.ts: Tests error handling middleware including
validation errors, database errors, and async error handling
- server.test.ts: Tests server initialization, middleware configuration,
and route mounting for all API endpoints
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* chore(package): add test scripts for modular test suites
Add npm run scripts to simplify running tests:
- test: run all tests
- test:sqlite, test:agents, test:search, test:context, test:infra, test:server
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* build assets
* feat(tests): add detailed failure analysis reports for session ID refactor, validation, and store tests
- Created reports for session ID refactor test failures, highlighting 8 failures due to design mismatches.
- Added session ID usage validation report detailing 10 failures caused by outdated assumptions in tests.
- Documented session store test failures, focusing on foreign key constraint violations in 2 tests.
- Compiled a comprehensive test suite report summarizing overall test results, including 28 failing tests across various categories.
* fix(tests): align session ID tests with NULL-based initialization
Update test expectations to match implementation where memory_session_id
starts as NULL (not equal to contentSessionId) per architecture decision
that memory_session_id must NEVER equal contentSessionId.
Changes:
- session_id_refactor.test.ts: expect NULL initial state, add updateMemorySessionId() calls
- session_id_usage_validation.test.ts: update placeholder detection to check !== null
- session_store.test.ts: add updateMemorySessionId() before storeObservation/storeSummary
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix(tests): update GeminiAgent tests with correct field names and mocks
- Rename deprecated fields: claudeSessionId → contentSessionId,
sdkSessionId → memorySessionId, pendingProcessingIds → pendingMessages
- Add missing required ActiveSession fields
- Add storeObservations mock (plural) for ResponseProcessor compatibility
- Fix settings mock to use correct CLAUDE_MEM_GEMINI_RATE_LIMITING_ENABLED key
- Add await to rejects.toThrow assertion
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat(tests): add logger imports and fix coverage test exclusions
Phase 3 of test suite fixes:
- Add logger imports to 34 high-priority source files (SQLite, worker, context)
- Exclude CLI-facing files from console.log check (worker-service.ts,
integrations/*Installer.ts) as they use console.log intentionally for
interactive user output
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* docs: update SESSION_ID_ARCHITECTURE for NULL-based initialization
Update documentation to reflect that memory_session_id starts as NULL,
not as a placeholder equal to contentSessionId. This matches the
implementation decision that memory_session_id must NEVER equal
contentSessionId to prevent injecting memory messages into user transcripts.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* chore(deps): update esbuild and MCP SDK
- esbuild: 0.25.12 → 0.27.2 (fixes minifyIdentifiers issue)
- @modelcontextprotocol/sdk: 1.20.1 → 1.25.1
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* build assets and updates
* chore: remove bun.lock and add to gitignore
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---------
Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
Alex Newman